Rpro003384.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhodnius prolixus
Gene Symbol
-
Assembly
None
Location
HiC:2568036-2573163[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.0016 0.18 12.5 4.0 1 19 93 111 93 113 0.96
2 24 0.00016 0.018 15.6 8.0 1 23 117 139 117 139 0.99
3 24 1.5e-06 0.00017 22.0 1.0 1 23 145 167 145 167 0.99
4 24 5.2e-05 0.0058 17.2 3.6 1 23 173 195 173 195 0.99
5 24 0.0003 0.034 14.8 4.9 1 23 201 223 201 223 0.96
6 24 7.6e-07 8.5e-05 22.9 1.6 1 23 229 251 229 251 0.99
7 24 0.002 0.22 12.2 5.2 1 23 257 279 257 279 0.98
8 24 2e-06 0.00023 21.6 2.9 1 23 285 307 285 307 0.98
9 24 2.8e-05 0.0032 18.0 0.8 1 23 312 334 312 334 0.99
10 24 0.0007 0.078 13.6 1.4 1 23 340 362 340 362 0.97
11 24 4.9e-06 0.00055 20.4 2.5 1 23 368 390 368 390 0.99
12 24 3e-06 0.00034 21.1 1.7 1 23 396 418 396 418 0.99
13 24 0.00012 0.013 16.1 3.7 1 23 424 446 424 446 0.98
14 24 7.2e-05 0.008 16.7 0.7 1 23 452 474 452 474 0.98
15 24 3.2e-06 0.00036 21.0 0.6 1 23 480 502 480 502 0.99
16 24 1.3e-06 0.00015 22.2 2.7 1 23 508 530 508 530 0.99
17 24 6.7e-07 7.5e-05 23.1 0.5 1 23 536 558 536 558 0.99
18 24 0.0029 0.32 11.7 2.0 1 23 564 586 564 586 0.98
19 24 0.00026 0.029 15.0 5.5 1 23 592 614 592 614 0.98
20 24 3.5e-07 3.9e-05 24.0 0.8 1 23 620 642 620 642 0.99
21 24 4.4e-05 0.0049 17.4 0.7 1 23 648 670 648 670 0.99
22 24 0.00022 0.025 15.2 2.1 1 23 676 698 676 698 0.98
23 24 2e-06 0.00022 21.6 2.6 1 23 704 726 704 726 0.98
24 24 0.00018 0.02 15.5 2.7 2 23 732 753 731 753 0.97

Sequence Information

Coding Sequence
ATGTTTGAACATCCTGATGGAAataattcttctaaaataaatgatgAGATCGATCATTTCCAGaTTGGTCACTTCCTATCTGAAAATAGTGCATTATATTCTCAAGAGAATGTGGGCGATCTGCATGAAGAAGTCTATATTGAGACTTGTAACGAAGAAGAAATGATAGAAGGTGCTATGACAATTTCTGAACAGGAATTAAACATATCTAATACAAGCCAAGATCCACCTTCAAGTATGTTACTGCCCACGCTTGGAAATTCTGGTGAGAAGCCTTTCAAGTGTAGTGAATGTGATTACAGTTGTTCCAAGAAAGAACATTTTCAGGCACATGCAACAGAGAAACCATTTAAATGCAGTGTATGTAATTACTGTTGTTCAAAATCTTCAAGATTGAAAGTACATATGCGAAGACATACTGGCGAGAAACCATTCAAGTGTGATGAGTGTGGTTACGAGTGTGCTAGAAAAGTGGAATTACAAATACATTTACGAACACATACAGGCGAGAAACCTTATAAGTGCTTTGAATGCAATTACAGTTGTACTAATGCAACTGGTTTGAAAAACCATTTGAAAATGCATTCAATAGAAAAACCATATTTGTGTCAAGTGTGCCATTACGGTTGTAGGACTGCCTCAAAATTGAAGATGCATATGCGTTCACATTCAGGAGAGAAACTTTATAGATGTAATGAATGCGATTACTGTAGTACAAGGCCGAAAGATTTAATTGTTCATATACGAACTCATACAGGTGAGAAGCCTTTTAAGTGCAGTGAATGTGATTATTGTTGTTCAACTACGTCTAGGTTGGCCATACATAAACGGGCTCATTCAGAAGTGAATCCTTATATatgcaatgaatgtaattatagCTGTAAATCATATTCAGGATTGAAAGTACACATGCGAACACATACTGGCGAGCTATTCAGGTGTAATATATGTGATTACAGTACTGAAATTTCCTCAAAACTGACAATACATTTACGAACACATTATGGTGAGAAGCCTTATAGGTGTCCTGAATGTATTTATAGTTGCAATAATTCTACAAGCTTAAAGAAACATATAGGAATACATTCTAAAGAGAAACATTATATGTGTAATGAGTGCGATTACGGTTGTAGAACtgccacaaaattaaaaatacatatgcGTACGCATTCAGGAGAAAAACTTTATAGATGTAATGAATGTGATTATTGTAGTACAAAGCCGAAAGATTTAATTGTTCATATTCGAACTCATACAGGAGAGAGGCCTTTTAAGTGCAATGAGTGTGATTATTGTTCTACAAATACATCTACGTTGGCGAAACATAAACGGGCTCACTCAGAATTGAATCCTTTtaaatgcaatgaatgtaattatagCAGTAAATCATATGTAGGATTGAAAGTACACATGGGAACACATACTGGCGAGAAGCTATTCAGGTGTAATGTATGTGATTACAGTACTGTAACATCCTCAGAACTGACATTACATTTACAAACACATTCAGAAGAGAACCCTTATAGGTGCCCTGAATGTAATTATAGTTGTACTAATTCGACAAATTTGAATAGCCATTTGAAAATCCATTCATTAGAGAAAACTTATATGTGTAATGAGTGCGATTTCGGATTTGGAACTgcctcaaaattgaaaatacatatGCGTACGCATTCAGTAGAGAAACTTTATAGGTGTAATGAATGTGAATATTGTAGTACAAGGACGGCAGATATGACAATACATAATAGGATACACACAGGTGAGAAGCCTTTTAAATGTACTGAATGTGATTATTGTTGTACAAATGCGTCTAGATTGGCCAAACATAAACGGGCTCACTCAGAAATGAAACcttataaatgcaatgaatgtGATTACAGCGGTAAATCTTCCTCAGGATTAAAAATACACATGCGAACGCATACTGGCGAGAAGCCATTCAAGTGCAGTGTGTGTGACTATGGTACTGTAATGTCTTCAAAACTGAAAATACATTTACGGACACATTCAGGCGAGAAGCCTTATAAATGCCCTGAATGTATTTATAGTTGTACTAATTCTACTAGTCTAAAGAAACATTTAGAAATACATTCTAAAGAGAAGAATTATATGTGTAATGTTTGCGGTTATAGTTGTCGAACTGACTCACAATTGAAAATGCATATTCGCACGCATACAGAAAAACCTCTTAGATGTAATGAATGTGAGTACTGTTGTACAAGGCCGGTAGATATGATAATGCATATTAGAACACACAGGAAAGAAGCATAA
Protein Sequence
MFEHPDGNNSSKINDEIDHFQIGHFLSENSALYSQENVGDLHEEVYIETCNEEEMIEGAMTISEQELNISNTSQDPPSSMLLPTLGNSGEKPFKCSECDYSCSKKEHFQAHATEKPFKCSVCNYCCSKSSRLKVHMRRHTGEKPFKCDECGYECARKVELQIHLRTHTGEKPYKCFECNYSCTNATGLKNHLKMHSIEKPYLCQVCHYGCRTASKLKMHMRSHSGEKLYRCNECDYCSTRPKDLIVHIRTHTGEKPFKCSECDYCCSTTSRLAIHKRAHSEVNPYICNECNYSCKSYSGLKVHMRTHTGELFRCNICDYSTEISSKLTIHLRTHYGEKPYRCPECIYSCNNSTSLKKHIGIHSKEKHYMCNECDYGCRTATKLKIHMRTHSGEKLYRCNECDYCSTKPKDLIVHIRTHTGERPFKCNECDYCSTNTSTLAKHKRAHSELNPFKCNECNYSSKSYVGLKVHMGTHTGEKLFRCNVCDYSTVTSSELTLHLQTHSEENPYRCPECNYSCTNSTNLNSHLKIHSLEKTYMCNECDFGFGTASKLKIHMRTHSVEKLYRCNECEYCSTRTADMTIHNRIHTGEKPFKCTECDYCCTNASRLAKHKRAHSEMKPYKCNECDYSGKSSSGLKIHMRTHTGEKPFKCSVCDYGTVMSSKLKIHLRTHSGEKPYKCPECIYSCTNSTSLKKHLEIHSKEKNYMCNVCGYSCRTDSQLKMHIRTHTEKPLRCNECEYCCTRPVDMIMHIRTHRKEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-