Rpro003601.1
Basic Information
- Insect
- Rhodnius prolixus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:114-1557[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-10 1.9e-07 30.9 0.0 15 41 1 27 1 29 0.91 2 3 2.1e-10 2.9e-07 30.3 0.1 4 39 92 127 91 131 0.94 3 3 2.9 3.9e+03 -2.2 0.0 14 30 146 162 141 162 0.81
Sequence Information
- Coding Sequence
- GGTGGACTTAGCCTGAAGAGAGCAGCTGAACAATACGGAATTCCAAAGACAGTATTGTGGAGGAGAGTACAAAAACGAATAGATAtctgttcaaatttgaaatctaGAAGGAAGAAACAAGAGCGTGGtctaaaattagaagaaaataaaacttgtatTCTACAAGATGGAAAATTAACTACACAGAACAGGatCATTGGACCAACAGTACGTGCTAACAGAATGAAATCAGTCGAAATGGAAGTTTTAGGTGGCAAAGACAGTAAACAGTACAGATTGGCTCAGGCGTTGAATGCTTGTAAAGAGGGTAAAATGTCGCAGGCTGTGGCATCCAGGACGTACCAGGTACCAAAAACTTTAATATGGAGAAGATTACAAAAAGCTTGGTcaataaatcaaaatgaaacTGGAAGTAAATCTATAGATTCgacagaaaataaacaaatatccactgatgaaacagcaaaggagaATAATATCAGTTACATAGGAGTGCTTTCTAATGTTGACAGTTTTAACGTCAGTACATTATTTTGGA
- Protein Sequence
- GGLSLKRAAEQYGIPKTVLWRRVQKRIDICSNLKSRRKKQERGLKLEENKTCILQDGKLTTQNRIIGPTVRANRMKSVEMEVLGGKDSKQYRLAQALNACKEGKMSQAVASRTYQVPKTLIWRRLQKAWSINQNETGSKSIDSTENKQISTDETAKENNISYIGVLSNVDSFNVSTLFW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -