Rpro019775.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhodnius prolixus
Gene Symbol
br
Assembly
None
Location
HiC:2446124-2449353[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.8e-08 3.7e-05 23.5 0.0 14 38 197 222 186 225 0.86
2 3 1.7e-13 2.3e-10 40.2 0.0 6 41 240 274 235 276 0.90
3 3 1.1 1.5e+03 -0.8 0.0 14 24 303 314 300 315 0.84

Sequence Information

Coding Sequence
ATGATGGATTCTGCGGAAAAATATTGTATGAAATGGAATAGTTATCATAAACATATTGGTTCCTTTTTATCTGATCTCTGTGAATCAGAAGTTTTAGCAGATGTCACTATTTGGGCTGAAAATCAGAAATTTAATTGTCACAGAGTTATTTTATCAGCTTGTAGTCCATATTTTCAGgaaATTCTGTCTAATACAATATGCAAACATCCAGTGATAATATTAGCCGGGATTCTTGCAGAAGATAtcaaaactataatttattttatataccaTGGGGAATTGGAAAATATAACCTACGATagatttatttcagttttaaaaactgCGGAAATGCTTAAGATTTGTGGATTGACTGAGGTAATAGATCATATACCTCCAAGAAAATGTTTAGAAGATTTGGAAGAAATAATCATGATGGATGATGGGGTAAATGAATCTACCTTTTGCAATCCACCACGACAGGGAGGAAATTCTATGGAAGTTGGATTATCCAAAACTTCTGaggaagatattgagaaaaaaccaaaaccaaaaaaacatcaAAGGAAATATAgTGAGGGTAGCCTTGGTTGGGCGTTAAGCGATATGGAAAAAGGCATGTCATTGGTTGAGGCTGCAAGATTGCATAAAATACCAAGATCTACTTTATATGCTAAAGCAAAGCAACATTCTGGTTTAAGAATAGCGAGCAGAAAAGAGCACACAAATCAAGATTGTCAAGCTGCTGTTCAGGCTATTGCAGGTGGACTTAGCCTGAAGAGAGCAGCTGAACAATACGGAATTCCAAAGACAGTATTGTGGAGGAGAGTACAAAAACGAATAGATAtctgttcaaatttgaaatctaGAAGGAAGAAACAAGAGCGTGGtctaaaattagaagaaaataaaacttgtatTCTACAAGATGGAAAATTAACTACACAGAACAGGGCGAGTAGAACAGAGGAGAAAAGTGATGATCACAAATACGTGGAAGCGGTTAAGGATGAACAATTCACCGAAGcaccttttataattttagcaTCCGCAAATGATGTTCTACCAAAGCAAGAAAATCGTGAACGATGA
Protein Sequence
MMDSAEKYCMKWNSYHKHIGSFLSDLCESEVLADVTIWAENQKFNCHRVILSACSPYFQEILSNTICKHPVIILAGILAEDIKTIIYFIYHGELENITYDRFISVLKTAEMLKICGLTEVIDHIPPRKCLEDLEEIIMMDDGVNESTFCNPPRQGGNSMEVGLSKTSEEDIEKKPKPKKHQRKYSEGSLGWALSDMEKGMSLVEAARLHKIPRSTLYAKAKQHSGLRIASRKEHTNQDCQAAVQAIAGGLSLKRAAEQYGIPKTVLWRRVQKRIDICSNLKSRRKKQERGLKLEENKTCILQDGKLTTQNRASRTEEKSDDHKYVEAVKDEQFTEAPFIILASANDVLPKQENRER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01301732;
90% Identity
iTF_01301732;
80% Identity
iTF_01301732;