Rpro018578.1
Basic Information
- Insect
- Rhodnius prolixus
- Gene Symbol
- bab2
- Assembly
- None
- Location
- HiC:60613423-60624857[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-12 3.9e-09 36.2 0.0 1 39 390 429 390 433 0.90 2 4 6.3e-13 8.4e-10 38.4 0.1 2 39 445 482 444 485 0.92 3 4 6.5e-17 8.7e-14 51.1 0.0 2 45 500 544 499 544 0.98 4 4 0.27 3.6e+02 1.1 0.1 1 13 551 563 551 564 0.91
Sequence Information
- Coding Sequence
- ATGTATAGCGGAGACGACGGGGAAGACGACATGGGATCTGCACAACATTACTGCCTCCGCTGGAATAATTATCAGTCAAATATGACTTCAGTATTCCATCATCTACTGAGAACACAAGCTTTTGTTGATGTTACTCTAGCTTGCAACGATCAGTCTCTCAAAGCGCATAAGGTTGTCCTTTCTGCTTGTTCTTCCTACTTTCAAAAACTTCTGTTGGAAAACCCATGTAAACATCCAACCATCATTATGCCGCAAGATGTTTGCTTCACGGATCTCAAATTCATCATAGAGTTTGTTTATAAAGGAGAAATTGATGTTTCGCAAGCAGAATTACAATCCTTGCTGAAGACAGCAGACCAGTTGAAGATTAAAGGGTTGTGCGAAGTAGAAGATGGCAAGGAAGGTGCTGAAGTAACACCTCTTCCACCAACTCCCAGGAGACGAGTGACTCATAAGCAACAAAGGCTAGCAGCAAAAAGGCGTTTATATAAGCAAAAGATACCGAGTGATGCTCAGGACGATTTTCCGGAGAGTATGGACGTTGGTGATGATGGtgtagatgatgatgatgatgacgacgacgacgacgatgaTGATGACGATGAAGAACCCAAAGAATTACCAGTGGTAGTTGTCCAACAGAGTCCATCAGCACCGCCAGAAGATGTGATTATGGGTCCACAACAGCCTTCCACAGCAACTGCTGCTATTCTACATCAGCAGCCACAATCTGTTGCCATTGGTCATGATTCTCCTCAGATTGGATGTGAGGCTGCCGTAAGGGAAGGTGAAGTTACAATGGGAGCAGAACCTAGTCCACCATCCGCAACTCTGGTTACCACAATGCAAGCTCCTGAGGCCACTCATCGTGATATTGcagtggaTTCAAGAGATTTGGCTGATGAagataataaagtgaaatttgaaACTCTAAGAGCAATTGACCATACAGAGCAAATGAAGGTAGAAACTCAAATAACTGACAGGaCGGTGCAGACAGTTGATGAGGAGGATGATCCAGCTATGCACACTATGATGATTACACCAGAACTTCTGGGTCTGATTCCTTCATCACAAtcagATTGTAGTGATGTTTGTTCAACATCAACGGTGAAAAGTAACTATTCAACGATGTGTACTGGTCTGAATGGAAACAGTAAGTCTTGGACACAAGAAGATATGGATCAAGCGTTGCAAGCACTCAGACATCAAACTATGTCATTGAGTAAAGCTAGTGCTACTTATGGAATACCTTCTACAACTTTGTGGCAACGGGCACATCGCCTTGGTATAGACACACCAAAAAAAGAGGGGCAAACTAAGTCGTGGACTGAACACAGCCTTAATACTGCTCTTGAAGCTTTAAGGACCGGCCAGATTTCGGCGAATAAGGCTAGCAAAGCTTATGGGATTCCCAGTAGTACATTGTATAAAATAGCAAGGCGAGAAGGCATTCGTCTCGCGGCACCCTTCAATGCCGCGCCAACTGCTTGGGTTCCTGAAGATCTCGAAAGAGCTTTAGATGCTATTCGTTCTGGTCAATGTACTGTGCAAAGAGCAGCTGCTGAATATGGAATACCTTCAGGCACATTGTATGGCAGGTGTAAGAGGGAGGGCATCGAATTATCCAGAAATAATCCCACACCTTGGTCTGAAGAGGCAATGATGGACGCTCTGGAGGCAGTCAGGTATTTAGTTTAA
- Protein Sequence
- MYSGDDGEDDMGSAQHYCLRWNNYQSNMTSVFHHLLRTQAFVDVTLACNDQSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFTDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVEDGKEGAEVTPLPPTPRRRVTHKQQRLAAKRRLYKQKIPSDAQDDFPESMDVGDDGVDDDDDDDDDDDDDDDEEPKELPVVVVQQSPSAPPEDVIMGPQQPSTATAAILHQQPQSVAIGHDSPQIGCEAAVREGEVTMGAEPSPPSATLVTTMQAPEATHRDIAVDSRDLADEDNKVKFETLRAIDHTEQMKVETQITDRTVQTVDEEDDPAMHTMMITPELLGLIPSSQSDCSDVCSTSTVKSNYSTMCTGLNGNSKSWTQEDMDQALQALRHQTMSLSKASATYGIPSTTLWQRAHRLGIDTPKKEGQTKSWTEHSLNTALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWVPEDLERALDAIRSGQCTVQRAAAEYGIPSGTLYGRCKREGIELSRNNPTPWSEEAMMDALEAVRYLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301721;
- 90% Identity
- iTF_01301721;
- 80% Identity
- iTF_01301721;