Basic Information

Insect: Rhingia rostrata
Gene Symbol: ush
Assembly: GCA_949824845.1
Location: OX463755.1:31923417-31927300[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.092 12 7.3 0.1 1 20 181 200 181 202 0.89

2 9 0.00024 0.031 15.4 0.8 1 23 247 269 247 269 0.98

3 9 0.026 3.3 9.1 1.0 2 21 294 313 294 314 0.92

4 9 0.042 5.3 8.4 2.9 2 21 683 702 682 703 0.93

5 9 0.0076 0.96 10.8 0.0 3 21 740 758 738 759 0.92

6 9 4.4 5.5e+02 2.1 0.1 1 23 804 826 804 826 0.65

7 9 0.012 1.5 10.1 1.3 1 23 832 854 832 854 0.99

8 9 0.00016 0.02 16.0 0.6 1 23 925 948 925 948 0.96

9 9 0.21 26 6.2 1.4 2 20 1082 1100 1081 1102 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.092	12	7.3	0.1	1	20	181	200	181	202	0.89
2	9	0.00024	0.031	15.4	0.8	1	23	247	269	247	269	0.98
3	9	0.026	3.3	9.1	1.0	2	21	294	313	294	314	0.92
4	9	0.042	5.3	8.4	2.9	2	21	683	702	682	703	0.93
5	9	0.0076	0.96	10.8	0.0	3	21	740	758	738	759	0.92
6	9	4.4	5.5e+02	2.1	0.1	1	23	804	826	804	826	0.65
7	9	0.012	1.5	10.1	1.3	1	23	832	854	832	854	0.99
8	9	0.00016	0.02	16.0	0.6	1	23	925	948	925	948	0.96
9	9	0.21	26	6.2	1.4	2	20	1082	1100	1081	1102	0.91

Sequence Information

Coding Sequence: ATGAGCGTTTTAGATATTCACACGATCAACTGTTCCCAATTCTATCTATTTCCAGAAACAAAAGAACTTAGTCCAAGCGATTTGAATGAACAAGCCGATGCGGTTTCGTCTGCGGACATTGATCTATCAGCCGAAGCACGAACGCCGTTTACAACAGAATCACTAATGGACGATAATCGCCCGTCTTCGAGTACACCCCGGACACTATCACCGCCCTCCGATCCGGAAGCAGATGATCATCGATCGCCTTCGGTAAGATCTGATCTACAGTCGGCGGCGAATTCACCTTCCGATGAGCATGATGAAGTATTGATAGTTCCTGCTGTTGCTGCGATTCCTAAGCTGCGGCTAAATGCACTTCTAGCCTCTGATCCCGCCCTGAATCCGGATgcgagaaatttaaaaattcttcatGAAGAGTCCACCAAGAATCACCATCACGAGGAATCGGATAGTGCAACACCCACACCAGTAGGTGAGCAGAAGACAAAAAGCCAAACATCAGCTGTTGTTGTGGACAATACGCAACGAGTGAAGGTGTTTATGTGTCTTCCCTGCAGTATTGGGTTCTCGTCGAGATCGACGCTGGAAGCACATCAGGCGTACTACTGTTCCCACAGAAAAGAAGTTGAAGAAGATCCAGCAGGAGGAGGCGCTGGAAGCGTCTCATCTGGAGATAAAAATTCCACCATAATCTCTGGTGAACCATCAGCGAAATCCATTAAGACTGGCAAGCAATACGCTTGCACACAGTGCTCCTACAGTGCCGACAAGAAGGTCTCGTTAAATCGGCACATGCGAATGCACCAAAGTTCACCGGCTCCAAGTTCGAACGCCTCGAACGGTGGCGATGATAGTTCTAGTCAACAAGTCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTTAAGACATATCGGGCGCATAAGCAACACTATTGTAGTTCCAGACGCAATGATGGGCAAACAACACCAAAACTTCCAGAGCCCAGCTTAAAGTCTAGTGGCGGTTCCGTAAGTCCACCGCAAGTCCGAACGAAAACACCGACTCCAGCTGCAGTAGTTGCAGCTGCAGCGGCAGCCGCAGCAGCAGCCGTAACTCCGCAACCATTCATTGCTCTACCGACAAATCCCATTCTTATTATTCCCTACTACCTTATACGAGCGGCCAGCATGATACCTGGACCATTAACGTCAGTATCGTCTGGAATAACGAATCCCGAAAGCACATGTTTCTCATTAGAAAACGGATCTCTCAAGCCAATGGCGACCGCCTTAAGCACCAGCAGCATTACGAACAACCAAATTCCACACGTGGACTCAACCCCACGATCACATCCTCCACCGCCAACCACTCCTTCGAATAATGAGACCGTAGTAGCATCATCTACGCCACTCCTGATGGAAAAAAACACACGTGCAGCATCTGTAAATAGTTGCAATGACTCTACAAAGCCTGGCAAAAAAGAAGGCGTTCGAGACTTTGCGCCGTTAGATCTTTCTCTCAGACGCTCGCCCATTCAGAGAGCTCAGCGTGTTCGATCATCTTCGAGTTTCTTGCAGCCCGTTGACGATAGAATCGATATCGAAACAATGATGGAGGGAAAGGAGAACCTATCCATCGACAGTGGCAGTATGACTCCTGAGCAAATTGTCTGCGCTCCATCATTACCCAACAGTCCCTCCATGAGTCCCTCGCCGAAACGACGCGCACTCAGTCCACGAAGCAGCAGTGCAGCTTCAATGTCCCCCGTACCGCCATCGGTTATGGACCACCTACCGTTGAGATCGATTCTACCCGCTGACATCGCCATGAAACTGACCGAGTCGAATATAATTCCACCGCTCATTGCCAAACAAAATCTGGAGCTGGCCTTCAAGTTGTCATCTGCGTCCGCAGCTGCAGCTGCCGTAGCAGCGGCGAACAGTAAGCAAAACGACGCGAACAAGGCGACGATGGGTAATCCCCTACTGGCGCCGATAAACGTGGGAGCAACATCCAGCGGCCAGCCACAGATCTTCGTCAAACAAGGCGTTTCCAAGTGTAAGGAATGCAACATCGTATTCTGCAAGTACGAGAACTACTTGGCCCACAAACAGCACTACTGTTCGGCTAGGAATCAAGAAGACACCGAGAACAAGACCAGTACTTCTCCGTCGGCATCGAATGCCGGTGTTGAGACTAATCCAATTGCCTATCAGCAGTTAATCTGTGCAGCCTGTGGCATCAAATACACTTCACTGGACAACTTGAGGGCTCATCAAAAGTTCTACTGTCCAAAGGGAGGTGGCGACGCCTCCGCAGCACCGCCAGTTACAAAAGAGAAATGTGCAAAGTGCAAGACGCTTCATGAAATTGGCCAGCCCTGCCCACCAATAGCTGCAGCCGCGCAACAAGGTTCCTACAAGTGTCCCGTATGTGAAGTAATCAGTCTAACGGCCGCCGAGAGTCGAAAGCATCTTGAAACGCACGGTAGTGTGAAGGCGTTTCGCTGTTCCATCTGTCGATACAAGGGGAACACGCTGCGTGGTATGAGGACGCACATTCGGATGCACTTCGACAAGAAGACTTCAGACTTCAACGAGGAGAACTACATGTCATGCATTCTGGAAGATGATGGATTGGAGATACCAAGCCCTGCGTctctcagccaagaacaagCAGCACAATTCGCTCAACAGCAACATATTCTtctgcaacagcagcaacaacaacagcagtcaTCCACACAGCAACAGCATTCGCCACAACAGCCACAACAGATATTCAACTGCGAGATCTGCAACTACTCATCCTCCTACAAAGGCAATGTGatgCGCCACATGAAGCTGGTTCACTCACAACCTGGAACATCGCCCTCCATTTCCCCCGAAATGATGATGGAGGAAGGGGAACCCACCAACACTCTCAGTCTTAACGGCGACAATGGCAACAGCCTTCCCGACGGTTTTACCATAAAAACGGAACCACTCGAACCAACCGCCACTATCATCAccaaaaacaataacaactcCACCCCcaatcatcaccatcatcatcatcatcatctggaCTCACTCACACAGATCAAATCAGAACCTATGGAGACGGCAGACAGTGTCATTCGAACACTTCCATCACCCTTGGCAGTGCCACCGCCACCGCTTAACTCATCATCGCCCCTGTCGGGTGATGAGAATTCATTATTGAGGAATTCCACGTCGATTGGATCGAGCGGAATGCCCTTCAACCAGAAGTACTGTCACACATGCGACATCAGCTTCAACTATATGAAGACCTACCTAGCGCATAAGCAGTTCTATTGTAAGAATAAACCTCAAGGTGACGGCGATAGTACGAGTCCAGTACCGCCAGTGCAATCGCCAACAATGTTGAATAAGAACAAGGAAAACCTGGAAGCAGCTTTGTTATAG
Protein Sequence: MSVLDIHTINCSQFYLFPETKELSPSDLNEQADAVSSADIDLSAEARTPFTTESLMDDNRPSSSTPRTLSPPSDPEADDHRSPSVRSDLQSAANSPSDEHDEVLIVPAVAAIPKLRLNALLASDPALNPDARNLKILHEESTKNHHHEESDSATPTPVGEQKTKSQTSAVVVDNTQRVKVFMCLPCSIGFSSRSTLEAHQAYYCSHRKEVEEDPAGGGAGSVSSGDKNSTIISGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQVDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLPEPSLKSSGGSVSPPQVRTKTPTPAAVVAAAAAAAAAAVTPQPFIALPTNPILIIPYYLIRAASMIPGPLTSVSSGITNPESTCFSLENGSLKPMATALSTSSITNNQIPHVDSTPRSHPPPPTTPSNNETVVASSTPLLMEKNTRAASVNSCNDSTKPGKKEGVRDFAPLDLSLRRSPIQRAQRVRSSSSFLQPVDDRIDIETMMEGKENLSIDSGSMTPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASMSPVPPSVMDHLPLRSILPADIAMKLTESNIIPPLIAKQNLELAFKLSSASAAAAAVAAANSKQNDANKATMGNPLLAPINVGATSSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDTENKTSTSPSASNAGVETNPIAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGGDASAAPPVTKEKCAKCKTLHEIGQPCPPIAAAAQQGSYKCPVCEVISLTAAESRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPASLSQEQAAQFAQQQHILLQQQQQQQQSSTQQQHSPQQPQQIFNCEICNYSSSYKGNVMRHMKLVHSQPGTSPSISPEMMMEEGEPTNTLSLNGDNGNSLPDGFTIKTEPLEPTATIITKNNNNSTPNHHHHHHHHLDSLTQIKSEPMETADSVIRTLPSPLAVPPPPLNSSSPLSGDENSLLRNSTSIGSSGMPFNQKYCHTCDISFNYMKTYLAHKQFYCKNKPQGDGDSTSPVPPVQSPTMLNKNKENLEAALL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223805;
90% Identity: iTF_01300393;
80% Identity: -