Rros005177.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463755.1:116679832-116688225[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0062 0.78 11.0 0.1 1 23 162 184 162 184 0.96 2 10 0.00024 0.03 15.5 1.9 1 23 360 383 360 383 0.95 3 10 0.0003 0.038 15.1 1.4 1 23 395 417 395 417 0.94 4 10 0.0033 0.42 11.9 0.2 1 20 473 492 473 493 0.97 5 10 7.3e-05 0.0092 17.1 0.2 1 20 547 566 547 567 0.97 6 10 0.82 1e+02 4.4 1.6 2 23 599 620 598 620 0.90 7 10 0.086 11 7.4 6.2 2 23 633 655 632 655 0.95 8 10 9.3e-06 0.0012 19.9 2.1 2 23 748 770 747 770 0.97 9 10 0.007 0.88 10.9 1.3 1 23 787 809 787 809 0.97 10 10 0.027 3.4 9.0 0.7 1 23 824 847 824 847 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTTCCCATGCAATTTCGCGATCTATGTCGAGCTTGCATGAAAAGGCGCGACGATATGcgaatgtttttcttttcgcGGATAAACTCTGTAGATGTTGCCTCAATGTTGACCAAAATCGCTTTGCTGCCTGTCGAACCGTCGGACAGTTTGCCCAAAGTCCTATGTAGCGTATGCATCAAGAAGTTAAATGACGCGTATAATTTCCAACAGATGTGTATCAAATCGCACATAACGTTCAATGATATGCTGCAGTCGCAGCAATGGCCTCAGGATGGGTTTATCAAGAAGGAGCCGTTTGAGATGACTATCAGTGCTGTGGAATCTCAGGCAGATGTTGACGAAGAGAAGGATAATTCGATTTCGGGGGATACAGGGTTGCTGGATCCAAAAATAGAACCAGGATGTGGAGACGACTCCCAAGTCGGTTcgataaaaaatgaaaagagtTCCAAGTCTAGCGTAGTCAAGAGTAAGAAGTTTACGTGTAATTTTTGTCGAGATGTGTTTGAGACGTGGAATGAACTGGCAGTACATATTGCAGAGCATAAGACGAAAAGCAGTGCAACAGGCGACGAAAGCAGTTGTGAAGTGCCAGAGAAAAAGCGAAAGATTTCGCAAGCTAGCACGTCGAAGGAAGTGTTTCCCTCAGAATTAGGCTTTAGAATTGAGAATTTCGTATATGACGGACCCAGTGGTGAAAACAGTAGCTCTTTAGATGGTCTCCCCTTGGAGCCGATCTGCAATGTACAAGTTAAGGAAGAACTGAATTCGGAAAATAGTGGTTCGGAATACGACGAAGAAGGCGGGGAAGATGAAGAATCGATAAACAACAAATACAATCCTGACGGAGAAGAAGACCCTGACTATGCCGTTCCCATTAAAACTGAGAAGACAGATGGTGGTGGGGAACGCAGCTTCGTCAATTCTAAAAGTCCGGTCTGTGAGATGTGTGGATTCAAGCCGAAGATACCAGCTCTGATGCATGCGCATGTGCGAAACCGTCACCCGGATAATTACATGGAATATGTGGAAAACTTGAAAGCACAAATTGTGAACGATTGCACAGGATATTTCGAGTGCAATATGTGCGACCAGACCTTCAACACTAAGAATGACTTCTTCTTGCACAAGAATCAAGCTCATaaTATGCGTAGAATCAACAAAGCAAAGCAGATATTTATGTGTCTGTTGTGTGATAAACAGTTCAACCGGTATACAAATCTACAGCAACATGAAGATAATCACGATGCTGATGGTACAGGCTCGTCAACTGCGAACATCATCAGACCTGGTTTCAAAAAGAAGCGAACCGAGCTCCCTGCTGAAGTTGTAGTGACACCAGTTGGGGCGACTTTAAGAACTCCTCCCAAGAAGACCAATGCTGACATCACTATCACCACCAATGGTAAATTCCAATGCCATGCatgcgaaaaatcatttggcaATGAATTCGGTCTACGAGTACACATCGGTTGTGTTCACAAGGGAATGGAAAAGCTCCCAAAACATGATACCAAGCCAGAGAAAATCGAAAGCAAACCAGAAAAACCACAATATACCGACATAAAACCCAGCACCGTCATAGCATACAGTCCTACCACCACAGTCGCCAATACCTCTACTGGAGGGAAATTCCAATGTCATGGATGCGAGAAATCATTTGCAACCGAATTCGGATTGCGAGTGCACATCGGCTGCGTCCATAAAGGAATGGAAAAGCTTCCACCAAAAAGTGGAGGAATCAAACCAACCTCGGCCGCCGTGGCCAAACCACAAGCAACCGACAGTTATTGTGAGATATGTGAGAAGCAATTTGATTCAGTCACAGATTGTGGATCACACATGAGCAAGCACTACGAAGTTGCATACAGCTACAGAGAACGAGCAATTCGCTGTAAGGAATGCAAGCACGAGTCCTACACTCGTTCGGAATTCAAACATCACATCAAACAAAGACACAAGGAAATTTACAGGAAACGCATTGCTGGCCTCGCAACAATGGATCCGAAATTTGAAGCGTGTAACATGTGCTTTATGCCGGTTTTCCATACAAAAATGATCAGACACATGAACTCGCATTACATGGGAGAGAAAGAGAGGAGAGATGAATCAGATGAACTCATCACACCATCTCCAACTAAATCTCCGAGCACCGTCTCGAAACTCTCTAAGTTTCTATCCAAAGACCATCTTACCTCTGCCCTGCAGCAGCCCAACGGAAAAACTATCAAACTCAAATGTAAAACATGCTCGAAATTCTACCCGGACAAGTCATCTCTCATGAAACACATGCTGACGTTCCACAAGAAGTATGAGGGACATACAAATACAACAGCAAATGGAAGGAAAGTATTCAACTGCAAAATATGTTTCCGTTCGATTTCAGGTTTGCAAAATTTCAACTCCCACATGTCTTCGCACAGGGGTTCCTATCATTCGAAAACCAAAGCACCCAAGAAtAGCCATTCATGCCACTTGTGTTCTGGAATATTCGGCGAGAAGGAGGATCTGCAAAAGCATCTAGTTGTGGCGCATAGTTTTAATCCaatgatattttataaaaagtaa
- Protein Sequence
- MALPMQFRDLCRACMKRRDDMRMFFFSRINSVDVASMLTKIALLPVEPSDSLPKVLCSVCIKKLNDAYNFQQMCIKSHITFNDMLQSQQWPQDGFIKKEPFEMTISAVESQADVDEEKDNSISGDTGLLDPKIEPGCGDDSQVGSIKNEKSSKSSVVKSKKFTCNFCRDVFETWNELAVHIAEHKTKSSATGDESSCEVPEKKRKISQASTSKEVFPSELGFRIENFVYDGPSGENSSSLDGLPLEPICNVQVKEELNSENSGSEYDEEGGEDEESINNKYNPDGEEDPDYAVPIKTEKTDGGGERSFVNSKSPVCEMCGFKPKIPALMHAHVRNRHPDNYMEYVENLKAQIVNDCTGYFECNMCDQTFNTKNDFFLHKNQAHNMRRINKAKQIFMCLLCDKQFNRYTNLQQHEDNHDADGTGSSTANIIRPGFKKKRTELPAEVVVTPVGATLRTPPKKTNADITITTNGKFQCHACEKSFGNEFGLRVHIGCVHKGMEKLPKHDTKPEKIESKPEKPQYTDIKPSTVIAYSPTTTVANTSTGGKFQCHGCEKSFATEFGLRVHIGCVHKGMEKLPPKSGGIKPTSAAVAKPQATDSYCEICEKQFDSVTDCGSHMSKHYEVAYSYRERAIRCKECKHESYTRSEFKHHIKQRHKEIYRKRIAGLATMDPKFEACNMCFMPVFHTKMIRHMNSHYMGEKERRDESDELITPSPTKSPSTVSKLSKFLSKDHLTSALQQPNGKTIKLKCKTCSKFYPDKSSLMKHMLTFHKKYEGHTNTTANGRKVFNCKICFRSISGLQNFNSHMSSHRGSYHSKTKAPKNSHSCHLCSGIFGEKEDLQKHLVVAHSFNPMIFYKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01300377;
- 90% Identity
- iTF_01300377;
- 80% Identity
- -