Basic Information

Insect: Rhingia rostrata
Gene Symbol: -
Assembly: GCA_949824845.1
Location: OX463755.1:140092413-140093600[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.9e-07 3.6e-05 24.7 5.1 1 23 7 29 7 29 0.98

2 9 2.1e-06 0.00026 22.0 1.9 1 23 35 57 35 58 0.95

3 9 1.4e-06 0.00017 22.5 2.0 1 23 63 86 63 86 0.92

4 9 0.00011 0.014 16.6 1.4 2 23 106 127 105 128 0.95

5 9 3.6e-05 0.0046 18.1 0.5 1 23 133 155 133 155 0.96

6 9 1.2e-06 0.00015 22.7 2.4 1 23 161 183 161 183 0.98

7 9 2.3e-07 2.9e-05 25.0 0.5 3 23 191 211 189 211 0.96

8 9 1.2e-06 0.00015 22.8 1.3 1 23 217 239 217 239 0.99

9 9 5.6e-05 0.007 17.5 1.8 1 23 244 267 244 267 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.9e-07	3.6e-05	24.7	5.1	1	23	7	29	7	29	0.98
2	9	2.1e-06	0.00026	22.0	1.9	1	23	35	57	35	58	0.95
3	9	1.4e-06	0.00017	22.5	2.0	1	23	63	86	63	86	0.92
4	9	0.00011	0.014	16.6	1.4	2	23	106	127	105	128	0.95
5	9	3.6e-05	0.0046	18.1	0.5	1	23	133	155	133	155	0.96
6	9	1.2e-06	0.00015	22.7	2.4	1	23	161	183	161	183	0.98
7	9	2.3e-07	2.9e-05	25.0	0.5	3	23	191	211	189	211	0.96
8	9	1.2e-06	0.00015	22.8	1.3	1	23	217	239	217	239	0.99
9	9	5.6e-05	0.007	17.5	1.8	1	23	244	267	244	267	0.97

Sequence Information

Coding Sequence: ATGGTAGATGATAACAAATACAAATGCACTGTGTGCCAGAAAACCTTTTCAAGAAAAAGTCACGTGAGACGTCATCTCTTATCACACAAAGAAGATAAACCGTACGCGTGTACAGTTTGCGATAAGCGATTCGGCCGAGCTGATCACCTTAAAGTGCATGTAATCAAACACCACGATGAAAAACCGTTTCCATGCGATGAATGTGATCGTAAGTTTTCTACTTCATCACTGCTTAAGCGTCACAAGCTGTTTAAGCATGATAAAAACAGTGTTGAGAAATCGGAACACATGCGACTGCACACGGAGAGAGGTTGGAAATGCAAGATGTGTCCAGCTCAGTTTGAAACGAAAGAGTCCTTAAAGGAACATGCCAAATCCCATCACAAAGAGAGACCATACTTGTGTTCAGAATGTGGTTTGCGTTTCCTTCGAAACGACTACCTGCTGGTGCATATGCGAAGACATAACGGTGAGAAGCCGTTTAAATGTAAGTACTGTGATAAACGTTTCCCAAGGACTACAGATTTGAATGTTCACGAGAGATACCATACCGGAGAGAAAACGCACCTTTGTACCATATGTGGGAAGGGATTTCAGCGAGCATATAATTTGGTTGTTCACATGCGAGTTCACACCGGTGAGAGACCATATCAGTGTCCATCCTGCCCAAAGAATTTTGCCCAGTGCAATGATTTAAAGGCACACGTACGCAGGCACACTGGTGAGAGGTACAAATGCGAAATATGCGGAGCGGGATTCATTCAAGGCTACCATTTGACGCAACACAAACATACTGTTCATGGAATTGAAATGGAATCTCGTACTGGAAGAGTTACAAAAGTATCAAGTAACGGAGTGAACGAAAAAGTTTTACCCAAAGACATTGTACACAAAGACAAAACTGCAGAAGATTTTAACTTGGAACATTCATTAATAGTGAAATAG
Protein Sequence: MVDDNKYKCTVCQKTFSRKSHVRRHLLSHKEDKPYACTVCDKRFGRADHLKVHVIKHHDEKPFPCDECDRKFSTSSLLKRHKLFKHDKNSVEKSEHMRLHTERGWKCKMCPAQFETKESLKEHAKSHHKERPYLCSECGLRFLRNDYLLVHMRRHNGEKPFKCKYCDKRFPRTTDLNVHERYHTGEKTHLCTICGKGFQRAYNLVVHMRVHTGERPYQCPSCPKNFAQCNDLKAHVRRHTGERYKCEICGAGFIQGYHLTQHKHTVHGIEMESRTGRVTKVSSNGVNEKVLPKDIVHKDKTAEDFNLEHSLIVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -