Basic Information

Insect: Rhingia rostrata
Gene Symbol: -
Assembly: GCA_949824845.1
Location: OX463756.1:137036444-137039581[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 1.4 10.2 2.9 2 23 221 243 220 243 0.92

2 12 5.3 6.6e+02 1.8 4.0 2 23 249 272 249 273 0.74

3 12 4.2e-05 0.0053 17.9 5.8 1 23 277 299 277 299 0.98

4 12 9.3e-08 1.2e-05 26.2 2.4 1 23 305 327 305 327 0.98

5 12 7.3e-08 9.2e-06 26.5 1.2 1 23 333 355 333 355 0.98

6 12 1.3e-07 1.6e-05 25.7 1.1 1 23 361 383 361 383 0.98

7 12 8.2e-05 0.01 16.9 1.6 1 23 389 412 389 412 0.97

8 12 1.3e-05 0.0016 19.5 0.4 1 23 425 447 425 447 0.99

9 12 3.4e-05 0.0043 18.1 0.2 1 23 454 477 454 477 0.88

10 12 8.2e-05 0.01 16.9 0.8 1 23 483 505 483 505 0.94

11 12 0.002 0.25 12.6 2.4 1 23 511 533 511 533 0.95

12 12 7.5e-05 0.0095 17.1 0.8 1 23 539 561 539 561 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	1.4	10.2	2.9	2	23	221	243	220	243	0.92
2	12	5.3	6.6e+02	1.8	4.0	2	23	249	272	249	273	0.74
3	12	4.2e-05	0.0053	17.9	5.8	1	23	277	299	277	299	0.98
4	12	9.3e-08	1.2e-05	26.2	2.4	1	23	305	327	305	327	0.98
5	12	7.3e-08	9.2e-06	26.5	1.2	1	23	333	355	333	355	0.98
6	12	1.3e-07	1.6e-05	25.7	1.1	1	23	361	383	361	383	0.98
7	12	8.2e-05	0.01	16.9	1.6	1	23	389	412	389	412	0.97
8	12	1.3e-05	0.0016	19.5	0.4	1	23	425	447	425	447	0.99
9	12	3.4e-05	0.0043	18.1	0.2	1	23	454	477	454	477	0.88
10	12	8.2e-05	0.01	16.9	0.8	1	23	483	505	483	505	0.94
11	12	0.002	0.25	12.6	2.4	1	23	511	533	511	533	0.95
12	12	7.5e-05	0.0095	17.1	0.8	1	23	539	561	539	561	0.98

Sequence Information

Coding Sequence: ATGGCACTTAATATTTGCTTGGACGAAACCTCCTTTCTAGAGAAAACATGTCGGGCATGTTGTCGCTACGACCCAAGTGATTCCATGACATTTCATCCGATTTTCAATGGTGTCGCAAACGACGAACAACCAAGTGCCGAATTGGCATGCGTTTTCAAGGAATTTATTCTCTGGAATTTAGAGatAAAACGCAACGATGGCCTTCCCCAGCAAATGTGCAACGAATGCTTGGGTAGGTTTGTACAAGTGAAACTTTTCCGTGAAGAACTTCTTGACTCTCAGCGATTGCTGTCGTCGTATGTGAAATGTGGGACAaatgaattggaaaaaaatgataatcCAACAATTACCATAGAAACACTTCCAATGGGCATGGATGGAGATCGTGTGGGGTATATATCGCCAAGCAAATTGATTGAATATGTTGGCTCAGATGAGGAGGACGAGTTGGAGGGCCCTTCGTTTACTAAAAGTTGCACTGAAATTGATTATTTCGAAGAGAACGAGAGTGATTATCTATTCAATCATCCCAATCGTATTGAATCGAATGAGATGATGCCCACTAAGTCGGAGTCAGTTAGTTGCAATACGAATTTCGAGGAATTGGCTGTTGACAAAAAAGCTGAGGTTGAGGAGGCCAAGTTACTGGTGCGTAATACTAAATGTGAGCTTTGTTTGAGAAATTATCGCACCGAGGATCATCTCATGCGTCATAAGAGTCTGTTTCATATCCGGATGGACCGCACGTGTCCGATTTGTGGTAATAAATTTGAGAAGATCACACAGAGGAATTTCGATTATCATTTGAGGTCACATCATGAGAAGAAGTTCAAGTGCTCGTATTGCGAGAAGTGTTTCCAGCAGAAGATTCATCTGATCAATCATGAAAGAgtgcataccaaggagaatccGTTCTCATGCAATCAATGTGGCAAGAAGTTCCGCCAACAGACCAGTCTACGCGACCACATGTTGACCCACAAACACTCGCACCCATTCAAATGCGACATTTGCAGTAAAGGATTTACCTCTCGCTCAGCACTCCGTACACACATGCGCCTGCACGATGTCGAAAAGCAATACCAATGCGAGATCTGCGGCAAGAGCTTCAATCAAAAGGCCCACTTGGACCTGCACATGTTGAACCACACCAGTGAGAAGCCATTCCAGTGTGAATTCTGCTCTCAAGCTTTCCGCCAAGCCTATCAACTTGGTAACCACATGCATTCTATACATTTCAACAAACTGACAAACAGTATTCAGAACGGCTTCTACCAGTGTTCGCAGTGCGACCAGGAGTTCCCCAACGCAATGGATCTCATCCAGCACAAGAAAACCCATGACAGTGGCGAGCGCAAGTTCCTCTGCCCCCAGTGTGGGGCTAGATTTAAGCGAAAGACTAACCTGAATCTCCACGTGGATGCGGTGCATCTGAAGAAGAAGCCCTTCAACTGCATCTATTGCAGCAAAACGTTTGCGCAAATGTCCAATTTGAACGAGCATTTGAAGATCCACGATGGTTCCAAGCAACACAAATGCAGTTTCTGTGATAAATCGTTCGCTCTGAGAAAGACTTTACTGCTGCACGAGACGATTCACACAGGCGAGAAGCGCTTCAAGTGCAATTTCTGTGATCAATCGTTCGTGTATCGACAGACGCTAGGGGCACATATAATGAACCATTTTCGCGATGAGAACGAGGAGGAGTACAAGATTAACGAAGAAGTTCTTAGTGAGGATGATTTCCTGGGCTATGGCGAAGACTTGGATATCAATGACGACTTGGATCTCAGCGAGTTGAATGTGTATAATCTACTAATGGATTAG
Protein Sequence: MALNICLDETSFLEKTCRACCRYDPSDSMTFHPIFNGVANDEQPSAELACVFKEFILWNLEIKRNDGLPQQMCNECLGRFVQVKLFREELLDSQRLLSSYVKCGTNELEKNDNPTITIETLPMGMDGDRVGYISPSKLIEYVGSDEEDELEGPSFTKSCTEIDYFEENESDYLFNHPNRIESNEMMPTKSESVSCNTNFEELAVDKKAEVEEAKLLVRNTKCELCLRNYRTEDHLMRHKSLFHIRMDRTCPICGNKFEKITQRNFDYHLRSHHEKKFKCSYCEKCFQQKIHLINHERVHTKENPFSCNQCGKKFRQQTSLRDHMLTHKHSHPFKCDICSKGFTSRSALRTHMRLHDVEKQYQCEICGKSFNQKAHLDLHMLNHTSEKPFQCEFCSQAFRQAYQLGNHMHSIHFNKLTNSIQNGFYQCSQCDQEFPNAMDLIQHKKTHDSGERKFLCPQCGARFKRKTNLNLHVDAVHLKKKPFNCIYCSKTFAQMSNLNEHLKIHDGSKQHKCSFCDKSFALRKTLLLHETIHTGEKRFKCNFCDQSFVYRQTLGAHIMNHFRDENEEEYKINEEVLSEDDFLGYGEDLDINDDLDLSELNVYNLLMD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01300237;
90% Identity: iTF_01300237;
80% Identity: -