Rros014328.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463756.1:130641926-130643494[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00047 0.059 14.5 0.6 2 23 54 75 53 75 0.95 2 12 0.00075 0.095 13.9 1.1 2 23 164 185 163 185 0.96 3 12 0.0042 0.53 11.6 0.3 1 23 238 261 238 261 0.98 4 12 2.4e-05 0.003 18.6 1.6 1 23 272 294 272 294 0.98 5 12 2e-06 0.00025 22.0 1.5 1 23 300 322 300 322 0.97 6 12 8.1e-07 0.0001 23.3 1.5 2 23 328 349 327 349 0.98 7 12 1e-06 0.00013 23.0 3.1 2 23 356 377 355 377 0.96 8 12 1.3e-05 0.0016 19.5 4.4 1 23 383 405 383 405 0.98 9 12 1.2e-07 1.5e-05 25.9 2.0 1 23 411 433 411 433 0.99 10 12 0.00052 0.065 14.4 2.7 1 23 439 461 439 461 0.96 11 12 1.6e-06 0.0002 22.4 0.8 1 23 467 489 467 489 0.97 12 12 1.3e-06 0.00016 22.7 0.8 1 23 495 518 495 518 0.97
Sequence Information
- Coding Sequence
- ATGGCGGCCTACAAGAGCACAGTTAATTTCTCTGATATGGACACTGATGACAACTGCAACCAATCCGATTCTCCACACAAAAAAGGTGAGGATATAATAGTCAAGAAAGAACCCGAGTGTGAAGATGACATAGATAGCAATGAAGTCGAGAAAAATCTCACCTGCATGACTTGTGGCGAATGCTTTTCAACGGTTGGAGAATTGTTCTTACACATAGACCAACACGTCAAGTTTGAACTGAAGGAAGAGGTTGAAACATCGCCACTAAATGATAATTTAATTGTTAAAGTTGAATCCTCAGATATTGAAAATGATTGTAACATCACCCGTTCCGATTCACTGGACGATAAAGGTGATGATACGAATAATGCTTTCAATGCGGAGAATTTCATTAAGCAGGAGCCTGAGTGTTTACTCGACTCAATTGAAATTGAAGAGGAGCAAAAGGTACGTACATTCCCCAACGATGATCAAAATCTCAACCCACTGACCTGTCTGACATGTGAGAAACGTTTTCGAACGACTAATGAATTGTACTTACACATAGAAAAACACAACAAACTTGAACTCAAGGAAGAAGACGATGAAACGTTGCCACCAAATGAGTTTACCGATTGCCAGGTGCCTAAAAACCCAAATGCAAAATTCACCAGGGAGCAACTATTTCatgattttataaatgtgagcGTCGAGTTAGATGGAAAACCTACATACACCTGTAAGCTGTGTCCCAACGAAGTGTTCGATCGACAGATATCAATACGAAATCATATGCAGGTCCACGAGAAACCAAAGCTTAAAAAACAACCGTGCCACAAGTGTGACGTTTGTGATGCTAGCTTCACAAAACTCAGTTTACTAGAGTCACACAAGCGCTTGCACACCGGTGAGAAGCCATTCATCTGCGACATCTGTGGAAAATGTTTTCGCAATTCAGGGCAACTGTCTGGTCACAAGAAAATTCATTTCGAAAGGAGTGTACAATGTCCCAAGTGCGATAAAAAGTTCACTTTTAACAAGACTCTCCTCGTACACTTACGAACGCATTCCAAGGATCGCTCATGCACGTGCTCTTATTGCGGTAAGTTGTTCAAAACCAGTGTCAGTCTCACAAGCCATATGCGGGTACACACGGATGATAAGCCCCACAAATGTACGTATTGCGATAAGTCGTTCATGGAGAGAAAACGGCTAAACAGGCACATTCGCATCCACACTGGGGAACGCCCGTATAAATGTAGCTACTGTGATGCGACATTCACGAGAAATGAAAACCTCACGTATCATCTTCGATCACACACTGGAGAAAAGCCGTACGAATGTTCCGACTGTGGCAAGTGTTTTACCAAGGGTAAAGCACTTAGCTTTCACCAGAAAATTCACACTGATGACAAGCCCTACGCATGTCCACATTGCGATATGAGATTCCGACAGAGTGGGACTTTGAACACTCACTTGCTGATACACACAAACGAGCGTCCATTTAAATGTGATCTCTGTGACAAAAGTTTTAGACAGAGTGGTGTACTGAGGAGGCATGTTACCACTATCCATACAAATAATGTCTAG
- Protein Sequence
- MAAYKSTVNFSDMDTDDNCNQSDSPHKKGEDIIVKKEPECEDDIDSNEVEKNLTCMTCGECFSTVGELFLHIDQHVKFELKEEVETSPLNDNLIVKVESSDIENDCNITRSDSLDDKGDDTNNAFNAENFIKQEPECLLDSIEIEEEQKVRTFPNDDQNLNPLTCLTCEKRFRTTNELYLHIEKHNKLELKEEDDETLPPNEFTDCQVPKNPNAKFTREQLFHDFINVSVELDGKPTYTCKLCPNEVFDRQISIRNHMQVHEKPKLKKQPCHKCDVCDASFTKLSLLESHKRLHTGEKPFICDICGKCFRNSGQLSGHKKIHFERSVQCPKCDKKFTFNKTLLVHLRTHSKDRSCTCSYCGKLFKTSVSLTSHMRVHTDDKPHKCTYCDKSFMERKRLNRHIRIHTGERPYKCSYCDATFTRNENLTYHLRSHTGEKPYECSDCGKCFTKGKALSFHQKIHTDDKPYACPHCDMRFRQSGTLNTHLLIHTNERPFKCDLCDKSFRQSGVLRRHVTTIHTNNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301091;
- 90% Identity
- iTF_01301091;
- 80% Identity
- -