Rros005733.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463755.1:132097163-132097921[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-08 8.2e-06 26.1 0.0 4 40 14 50 12 53 0.94 2 2 6.6 2.8e+03 -1.2 0.0 4 12 218 226 216 228 0.86
Sequence Information
- Coding Sequence
- ATGTTGCAGCTTGTTTCGTTCTGTCATCATACTCAAATTGCCTTACAGGAAGCTATCAACAATGTTCTCAACAATAAGAAAACAATCGGCAGAGCTGCAAAAGACCACGGTATTTCCAAAACAACTTTGTTTCGTCATCTTCAAATGCATCGGAAATCTGGCGATGCAACGTTCAAATACCATTCAGAAATTGCACACAAAAAAGTGCTTAATTATGAAGAAGAACTTGCCTTGGTTGAATACCTTACCACAGCAGCAAAGCTGCATTATGGATTATCGAAAATTGATACAACCAAATTGGCCTTTAGTTTTGCAAAAGCAAATGGAAAAATTCTTCCGGAGTCGTGGATAAAGAACGAAGCAGCTGGCAAAGAGCGGATGATTGGCTTTCTTAAACGGCACCAAACTTTATCACTCAGAAAGCCAGAGTCGACCATCCTTTCCAGATCAACCAGTTTTAACCGCTGCAATGTGggaaatttttttaccaatttggAAGATTGCTATTCCCGTTTTAAATTTGACACAAGTAGAATTTACAATCTTGACGAAACTGGAAATTCAACGGTTCACGTCCCACCGAAAGTTTTAGCTGCCAAAGGTGAAAAACAAATAGGAAGCATGACTTCGGGAGAAAGAGGAATAAATGTCACTATGGTCGCGGCTATTAATGCAATAGGAAATCATGTTCCGCCGATGTTGATATTCACCCGAGGTCATCTCAAGGAACATATGCTTAACGGTGCTCCAGCAGGGTGA
- Protein Sequence
- MLQLVSFCHHTQIALQEAINNVLNNKKTIGRAAKDHGISKTTLFRHLQMHRKSGDATFKYHSEIAHKKVLNYEEELALVEYLTTAAKLHYGLSKIDTTKLAFSFAKANGKILPESWIKNEAAGKERMIGFLKRHQTLSLRKPESTILSRSTSFNRCNVGNFFTNLEDCYSRFKFDTSRIYNLDETGNSTVHVPPKVLAAKGEKQIGSMTSGERGINVTMVAAINAIGNHVPPMLIFTRGHLKEHMLNGAPAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299961;
- 90% Identity
- iTF_01300806;
- 80% Identity
- -