Rros015990.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- lolal
- Assembly
- GCA_949824845.1
- Location
- OX463757.1:28924951-28958957[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-18 3.8e-15 56.0 0.0 2 45 509 553 508 553 0.96
Sequence Information
- Coding Sequence
- ATGGTCGACTTTATGTACTACGGTGAGGTGAATGTGTCGCAGGAGCAACTGCCGCACATTCTCAAAACGGCTGAGATGCTTAAAATCAAGGGCTTAGCTGAAATGCCCACCGATGCGGCAACTCTAACAAAATCGGACAGCAAATCATCATCAGAACAACCCGATCAACTGCAAAGCAGTGGTAGTGGTACAGATTCATTGTGGGGCAGTTCCGAGTCACAATTTCAACAGCAACAACCGCAacagcatcatcatcaccaccaccatcagCAGAGTCAGACACAGCAACTGCATCAGCTAAGGAGAACACCATCCCCATTGGGTGCTGGCACCTCACCGGCCACACGGAGGAAACGGCTACGAAAGTCTTCAAATAACGGTTCTGGTGATCGCACTTCGGAAGATCATGGTGGTGTCGATACCGGAGCAAATATAAATCTATCCCAAATGAGTCAGATGTCATTTGGTGGCAATACAGCTGGTCTAGGACATACCCTACATACGAAAATAATTAAAGAGTCGACGAGTGTTGATGTTGAAGCTCATCAGCAAGACTCATCACCCGATAGCTTAGACGATGGTCATGGCCATCCCCATGCTATGCAAATTaaaCCCGAAACGGATATGAGTGTTCCACAGACCCTGCCCTTGGATATATCTGGAGGTACAACTCCCTCGGAGCATGATGGACCGAATGCCAGTTGCTCGCAGTCCCAGTCATCGCATTCAGGTCTGCAATGGACGGTCGTTGATTCAAATTATTCCCGATTTTCGCTGTCATCTTGTCAGGCCAATCTAATTGGCAATGGCAACACCAACAACCCTAATAACCCGAATGGCGGTGGATTGAGTAATCAATCGACCAACAACCCGGGCAATGGAAATCAAACTCAAGCAGAtcatcaacagcagcagcaacaacaacagcaacagcagcagcaacaacagcagcaacagcagcagcaacaacaacagcagcagcagcaacaacaacaacagcatcgccaacaacagcagcaacaaaacGCCAATAATGCGAATGGCAACACAAGTGCAAGCGGTGGCAATGGCTTGGGTAACcctcaacaacaacagcaacaaggTCACATTCAGATGCACTATCAGAACTCAACATATTCGCCACAAATCATTTCCGTCAATAGTCTGGTCGGCAGCTACTCGCAGAACCTATCGACGCCAACCTCCCCCAATGAGTCGGCAATGGTGCAATCGGTGTACAGTCAAGGACCGACACCAACCCAATCGCCAGTCCATCAGATGAACACAGTCCCGACGGGACTTACGTCCGCGGGAGGAGCGGGCGGCCCCGGTCCCGGCAGTGGTGCAAGTAGCAGCGGAAACCCGAATGGCGGCAATGGCACATCGCTTGGTGGCAGTGGCACAAGTGTAGTCAACACTGCTGGGAACAGTGGTGCGGTGGCAAATAGTAATCAAGTCCAAGCCGGCAGCCAGAGCACACAAACGACGACAGTGAAACGCAAGCGTTCCGTGAACCCACAAGGCGATGAGAACTTTATTCGAGCTCTAGAAGCGGTGCGATCCGGTGGAATTGGCTTTTGCAAGGCAGCTCGCCTCTACGGCGTGAACAATCGTACGCTCTGGCTGGAATACAAGAAGCGTGGTTATCCCATCAGTCGGCCGAGTATCAAAAGTCGTGTGGTAAAGCAGGAGAACCTCTCGCCATCGCCAACGCCCACCAATGAGGAGACCAATATCGAAAACTACGAGCAAATCAACCAGTCAGCTATTAACATGCAAGTTCCTCCGACATCGGACACGCCGACACCGATCATGTGCAACCCGCACACCCATCCGATGGGTGTGATGGGCTTCCTCGACACACGACACATGGAGTTCCCCGGCGGTATACACACAATGTCTCGACAGCGCTACGTCGACGGTGCTGTGAACGTCAACCCCGCGGCCATGAATCTGCAAAGTACCCCACCGGTATCCAACACCACAACGACACTACCCACTGTGAACGTAATGGGCAGTAAACGTAACCGTTTTCTTATACGCCAACCTCGTGTCAAACGAGACAGTGATGCTGCTAATCAAATATCACCTGAAACAACCGGACTTGATTTTGATCCTTTTAGTGGTGCAGCTGTCAGCTCATCATCGTCACATTATCTATCGGTACCACCGCGTATCGAACGTCATGCATCTGAGCCGGCTCCCAGTCTAACGCCATCATCACCGCACCTGCTTTCTGTGCCACAAAATACAccatttttggtcaaacaacATTCACACCCACTTCTGCCGAGCCAACAAAATCCAATGGCCTTGACGTTGTCGTCCACACCTTACGGACTGCACAGACAGCATTCACATCCACTTTCGTCCACAACCTCTGGTCACATATCAATGCCTGATGTCATATATCCACATGTAACAACACCTAGCAGTGGTTATATTATAGCGGGGAATACAACGACGCCGGCGTCGTCTTCAAATTCTACAAGTACCATAAATTTGTCACATTTGGTGACGCAACAACCCtcgtcatcaacatcatcaggAGCACCATTGTCAACTTCTATTAAACAAGAGGCTGAGAACAGTACTCACTCGAAATGTGGACACCTAGCGTCCACACATTCGTCATCGGTGATCTTGATATCGGAATCATCGAGTTCGGCGCCCAGTTCTGGGCTTGCAGCAACAATGGGGAGTAGCTCTTTTGAGCATGTACCCACACTGCGGGTAAAGAGCGAAGAACTGCAGCGATCAGTGTCATCGCCACAGACTAATCGTGAAATTATCACCCTGGAGAATCCCCGTTCCAGTCATTGTCCTGTAATTCGACCAGGTCCAGCATTAGGCTGTAATTTCTGTTGGAATACCATAGACGGTCATGGTAGAATTCTGCGTCGCAAAACCAAATACCACTGTCCCGAGTGTCAGACGAATCTTTGCATTGTACCGTGTTTCCAGGAGTACCACGAACGTCTCTCAACCGAGAATACATCCTCAACCagcgaaaacaacaaaaactactCATCAACCTCGGCAGGAGGTGGTGCTGCTGGTGGAAGCTTACGGCATTACTCAAAAACCGAATCGATTTAA
- Protein Sequence
- MVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDAATLTKSDSKSSSEQPDQLQSSGSGTDSLWGSSESQFQQQQPQQHHHHHHHQQSQTQQLHQLRRTPSPLGAGTSPATRRKRLRKSSNNGSGDRTSEDHGGVDTGANINLSQMSQMSFGGNTAGLGHTLHTKIIKESTSVDVEAHQQDSSPDSLDDGHGHPHAMQIKPETDMSVPQTLPLDISGGTTPSEHDGPNASCSQSQSSHSGLQWTVVDSNYSRFSLSSCQANLIGNGNTNNPNNPNGGGLSNQSTNNPGNGNQTQADHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHRQQQQQQNANNANGNTSASGGNGLGNPQQQQQQGHIQMHYQNSTYSPQIISVNSLVGSYSQNLSTPTSPNESAMVQSVYSQGPTPTQSPVHQMNTVPTGLTSAGGAGGPGPGSGASSSGNPNGGNGTSLGGSGTSVVNTAGNSGAVANSNQVQAGSQSTQTTTVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKSRVVKQENLSPSPTPTNEETNIENYEQINQSAINMQVPPTSDTPTPIMCNPHTHPMGVMGFLDTRHMEFPGGIHTMSRQRYVDGAVNVNPAAMNLQSTPPVSNTTTTLPTVNVMGSKRNRFLIRQPRVKRDSDAANQISPETTGLDFDPFSGAAVSSSSSHYLSVPPRIERHASEPAPSLTPSSPHLLSVPQNTPFLVKQHSHPLLPSQQNPMALTLSSTPYGLHRQHSHPLSSTTSGHISMPDVIYPHVTTPSSGYIIAGNTTTPASSSNSTSTINLSHLVTQQPSSSTSSGAPLSTSIKQEAENSTHSKCGHLASTHSSSVILISESSSSAPSSGLAATMGSSSFEHVPTLRVKSEELQRSVSSPQTNREIITLENPRSSHCPVIRPGPALGCNFCWNTIDGHGRILRRKTKYHCPECQTNLCIVPCFQEYHERLSTENTSSTSENNKNYSSTSAGGGAAGGSLRHYSKTESI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01522469;
- 90% Identity
- -
- 80% Identity
- -