Rros006940.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463755.1:166367320-166374517[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.3e-14 2.3e-11 43.9 0.1 3 42 346 386 344 388 0.87 2 3 1.4 6.1e+02 1.0 0.0 27 38 417 428 412 435 0.83 3 3 4.3e-09 1.8e-06 28.2 0.0 3 39 456 492 454 498 0.85
Sequence Information
- Coding Sequence
- ATGGAAGCGGATGATGACGAAAGTGCAGTAGAAAATAATGCTGAAGATTTTGTTGAATCTGACATCTCAGATAGTGAAACAGATGTTTTGGAGACTGCATCTGAATCAGACGATGAAATAAGAAGCAACGAATCTACTgaagcaactgaaggcagtgAAAGTGGCCGACCTCCAGCTCGTAACATCATCCGAGGCAAAGTAAATGAAGTTATTTTACCACCTGGAAAACACATTGATCATCCTGTGATTGGATTTACGCTACTTTTTACTGACGAAGTAATAGAGCTTATTGTGAAATACAATAACTTGGACGGAATCAACACAGTGGGCAACAAATGGAAGATAACAGATATAGTGGAAATTCGAGCGTTCATTGGACTATTGATCGATGCTGGATTACGAAGACAAGGTGGCACGTCCTACGAAGAATTTTGGGATCCTTTATTTGGGAGTCCAATTTATCGGGCTTGTATGTCGAAGAATAGATTCGTTGGACTATTGCGTCATTTACGTTTTGATGACAAATCTACACGGTCAACTCGCAGAGCGCAAGATAAATTCGCGCCAATTAGAGATATGTGGAATATTATAAACAGAGAATTGCGGAAACATTACATGCCGGGTAGTAACTTGACAATAGATGAACAACTAGTGCCCTACAGAGGTAGGGACGAAAATAGTATCAATATTGACGATGTCCATGATTCAGAGCCTGAATATGAAGCACTCCAAACGGTCCAATTATCCAGAGATGACACTACTAAAACATGCGATCAGTACATCATATACGAAGTCCAAGTCGACGCAGAACCATTCATAAACTATGTGTTCACGGAAATAAAGAAACCCCCGGACGATGGTGACCCCCATCTGCCGACGACTCCATCCGCtgttaaaagtaaatttcaagAGGTACAGCTGAACTCTCCCGCCGCCGCTCCATATCTTATAAGTGTGCAAATACCCATCGAAGAGGATCAAGAAGAATCCAAAGAAAATGCACCCAAATCTGGGCGTACCACAGCGGCTTCCAGAAAACAACTAGCTGAAGCTGTAACAGCTGTTGTCAATAAGGAAATGTCCATAAGCAAAGCTGCGATTGCTTTTGAAGTGACAAAGAGCACACTCTGGAAGGAAGTCAACAAACACACCAATCATCggcgaaaaaaagacaaaaccGAGCTAAATAAAAAGATCACCGATCGTATCTGTGCGGGCGAATCTCTCTCGGTTATTTCGAGATCTTTAAATGTGGCCAAATCCACCCTGCATCAGCATAAAGTTCGGTTAGCACAAAGCGGTCGGCTACCATCAAGTGTGCACCTCAAACCACCGACAGATCCATCAGTAAAGCTTGCCCAAAAGGAGCGTATCATACAAGCGTTCCGTGGCTGCCGTGTGAATGGTATGTCGATTCGTTTTGCCGCCAAGTTGTACTCAGTACCACCGTCGACATTATGGACACATATAAAGCGGTTTAAAGCATCGCAACAGAAGTCAGCTGaagcttttaaaaaagaaacggGCCATGTCAACGACGACGActatgacgatgacgatgaggacgatgacgatgaggaCGAGGAGGAGGATATAATATCGCCCATGGAACAAATGGAAATGGAGCAGTTCGACATGGACGAATATTACAAGCGACAAGAAGCGACGTCCATCAGTGAAGATGGCGACTTATTGATTAGTTTCGACTTCGAGTCGTTCGAGGAGTACATAAAAAGAGAGCTGGAATAA
- Protein Sequence
- MEADDDESAVENNAEDFVESDISDSETDVLETASESDDEIRSNESTEATEGSESGRPPARNIIRGKVNEVILPPGKHIDHPVIGFTLLFTDEVIELIVKYNNLDGINTVGNKWKITDIVEIRAFIGLLIDAGLRRQGGTSYEEFWDPLFGSPIYRACMSKNRFVGLLRHLRFDDKSTRSTRRAQDKFAPIRDMWNIINRELRKHYMPGSNLTIDEQLVPYRGRDENSINIDDVHDSEPEYEALQTVQLSRDDTTKTCDQYIIYEVQVDAEPFINYVFTEIKKPPDDGDPHLPTTPSAVKSKFQEVQLNSPAAAPYLISVQIPIEEDQEESKENAPKSGRTTAASRKQLAEAVTAVVNKEMSISKAAIAFEVTKSTLWKEVNKHTNHRRKKDKTELNKKITDRICAGESLSVISRSLNVAKSTLHQHKVRLAQSGRLPSSVHLKPPTDPSVKLAQKERIIQAFRGCRVNGMSIRFAAKLYSVPPSTLWTHIKRFKASQQKSAEAFKKETGHVNDDDYDDDDEDDDDEDEEEDIISPMEQMEMEQFDMDEYYKRQEATSISEDGDLLISFDFESFEEYIKRELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -