Rcam010701.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000076.1:2199935-2201662[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2e-05 0.003 18.8 0.7 2 23 109 130 108 130 0.97 2 11 0.0045 0.63 11.5 4.9 1 21 137 157 137 159 0.94 3 11 0.031 4.3 8.8 1.0 1 23 171 193 171 193 0.94 4 11 0.0017 0.24 12.8 0.8 2 20 198 216 197 219 0.94 5 11 0.00034 0.048 15.0 2.8 1 23 225 247 225 247 0.98 6 11 5.6e-05 0.0078 17.5 3.8 1 23 256 278 256 278 0.97 7 11 0.00016 0.022 16.0 2.8 2 23 285 306 282 306 0.96 8 11 5.8e-06 0.00081 20.6 7.9 1 23 312 334 312 334 0.98 9 11 4.5e-06 0.00064 20.9 3.1 1 23 340 362 340 362 0.99 10 11 0.036 5.1 8.6 1.1 1 19 405 423 405 428 0.93 11 11 7.8 1.1e+03 1.3 1.4 5 16 433 444 432 453 0.55
Sequence Information
- Coding Sequence
- ATGCATAGCGCCAGCGGAAGGACATCTATTTCCGTCTGCGATTTCACTCAAATCTGTCGCTGCTGTCTTACCAACGAAGCCGAGCTAAAGCCAGTTTTTAATACAATCGGAAATATTCCAGAGAAGGTGTTTCTATTAACAGCGGTAAAGTTAACTAAAAATGATGGGCATCCTGAGAATATTTGCACGAATTGCTTGCATCAGTTAAACAATTGCGCCGATTTCAAGCGAAAAGTAGAGGATTCGACCGAGTTGCTGAGAAGATATTTAAGTAGAGATAGTTTGGAAGAAAAGACAACCGAAATTTCATCCTCGCCAGACCTTACGTGTGAGTTGTGCTCGAGGTCGTATGCTAGTAGATCAGCGTACAATCGCCACATAAAGTCACACAGATCCAATGACAACACTTTTCGTTGCAACGAATGTGGAAAGAGGTTCAAGGAAAAGTATATTTTCCAAGCCCATCAAAAATGTCATACTAAGCAGTCAATCGGGCCAACACGGTCTGCTTATACGTGCCAAATGTGTAAGAGCAGTTTTGTCGTAGAGCATGATCTTCTCATTCATAATTCACTGCATGAAGATGGGAACAAGTGCAACTCCTGCGACAAGCAATTTGAAAACATTGCAAAGCTAAAGCGTCATATTCCGCAGCATTTCAAAGTAAAACCCTTTAAATGCCAGCAATGTGAGATGGAATTCACGGAGATGTCGTCGTTAACACGCCATTTTAAAAAGCACATAACGACACAACAACCCTCAACTCATGTTTGTTTAGAATGCGGTAAGGTTTGTTCCAGTCGATACACTCTGAAAGTCCACAGCCGCAGTCATACTGGTGAATGTCCATGGACGTGTTTGGATTGCAAAAAAAGATTTACAGACTATCGGCTATTGAACTCTCACAAGAAGATACACAAAGAGGGAAGACCCCACCAATGTGATCAGTGTAACAAGAGGTTTAGGCACAAGTCTTCATTAATTACCCACAAGCGAACACATTCTAGTGACCGTCCATATCGTTGTGAAAAGTGTAAAAAATCATACAAACAGTCGTGGTATCTTAAAATACATAAGCGTATTCATACCAATCAGAAGCGATTTCTTTGTGGTCAAGGTCCTCAATGTGCGCTTTCAGAGCATTCGCAATGGCATAGCGACCAGGTCACATCGGATGATTTTGATCCCAAAGAAAAGGAACCTCCAGAGTATTTTCAGTGTAAGGAGTGCTCAACGCAACTGTCATCTCGTTTTGACCTTATAACACATGATAAACTGACCCATGCCCTTCGTCATGAGTGTCACATGTGCTTTGGTAAATGGAAAACTTTGGAGGAGCTCGTCCAACATAAGTGCAATGAGGCAACTCAAGCAGTTAATGAACCGACGCCAGATGAAATGATAATGCTGCCGAATGGTGTGATTCAGGACTGCGATACCGTTGTTAATGCGCTGTTGGCATCAATTTCACAGGAGAAGCAAACGACTGAGTGA
- Protein Sequence
- MHSASGRTSISVCDFTQICRCCLTNEAELKPVFNTIGNIPEKVFLLTAVKLTKNDGHPENICTNCLHQLNNCADFKRKVEDSTELLRRYLSRDSLEEKTTEISSSPDLTCELCSRSYASRSAYNRHIKSHRSNDNTFRCNECGKRFKEKYIFQAHQKCHTKQSIGPTRSAYTCQMCKSSFVVEHDLLIHNSLHEDGNKCNSCDKQFENIAKLKRHIPQHFKVKPFKCQQCEMEFTEMSSLTRHFKKHITTQQPSTHVCLECGKVCSSRYTLKVHSRSHTGECPWTCLDCKKRFTDYRLLNSHKKIHKEGRPHQCDQCNKRFRHKSSLITHKRTHSSDRPYRCEKCKKSYKQSWYLKIHKRIHTNQKRFLCGQGPQCALSEHSQWHSDQVTSDDFDPKEKEPPEYFQCKECSTQLSSRFDLITHDKLTHALRHECHMCFGKWKTLEELVQHKCNEATQAVNEPTPDEMIMLPNGVIQDCDTVVNALLASISQEKQTTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -