Rcam022830.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000209.1:1648261-1651470[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.2 7.3e+02 1.8 0.2 2 9 266 273 265 275 0.85 2 10 0.00011 0.015 16.5 1.0 2 23 299 321 298 321 0.95 3 10 0.00048 0.067 14.5 0.1 2 23 348 369 347 369 0.96 4 10 0.0044 0.62 11.5 1.1 2 23 374 398 373 398 0.95 5 10 5.5 7.7e+02 1.7 2.8 2 9 405 412 404 426 0.72 6 10 0.0006 0.085 14.2 1.7 1 23 433 456 433 456 0.96 7 10 1e-06 0.00014 23.0 0.2 1 23 461 483 461 483 0.98 8 10 0.0001 0.014 16.6 0.3 1 23 489 511 489 511 0.98 9 10 2.8e-05 0.004 18.4 0.4 1 23 516 538 516 538 0.98 10 10 4.3e-05 0.006 17.8 1.9 2 23 545 567 544 567 0.94
Sequence Information
- Coding Sequence
- ATGGACTGCAGTTTGGAGTTGGATCCTGCAACCGTTTGTCGGATGTGTCTAGAGCCCCAAGAAAATCCGTATTCAATATTTACGAAGCACATTATCGAGGGAAACGTAAAAACCTTGCCAGACATAATATTTGCTTGCTTTTCAATAGATGTCATAGCTAACCCCATTCTGCCGAAAAATATCTGCGAGGGTTGCAAAACGTCTATCATTCAATTCTTTAAGTTCAGAGAAAATGTCATTCGCACGGAAAAGATTCTGGCCGAACTATTCAAGTTGGAACCTGATGTCATATTCAAGGAAGAACAGGAAATATTCACAGCCGACGAATACGGCGAACTTCCTATAGATCAGACATTGGTGGAAGCTGATATTGAATTCGATGATCAGTATGTCGAAGAAGAAGTTCAGTTGGATGGTGTGTGTGAGGAACCCTTTCAAGAATACGACACTGAATTCAATGAAATCGAAAATACAATCGAAGCTTATGTTCCGGATAAGTTTGATGATGAAAAGCCAGAGCTTGAGAAACCCGAATCGGAGAAACTTGAATCGGAAAAGGAGGATGAACTCACAACCATGGAATTAATTGACGAGGCAACGACACAGTACGGGGAATTCGATGAGGAGGCCTATATCAATGATATACCAGAGACACCTCAGACCGAGGATGAAGACGAAATGGTTATTTCCGAACAATTGGAGGACGATGTCGATTTCGAACCAGAAAATGAACCAAAAAAGCGACGCTACAGACGCTGCACAAAAAATGGCGAAACAAGGCCCACACTCACATTGATGTGTAAAATTTGCAACAAGCGTATAAAAATCGACGATGAAAATCACGACAAATTACACGATTCGTATGCTCTAATTGTAGCCGCAGAAACATTTGTTCAGTGCCACAGATGTGATCAAGTATTTATTACTACAGAAGAATTGCAAACTCATCTTCAACAAATGCATTACGACGACAATGAGGTGGAGGAGGATCTATTCAGTGACTTTCAGCTGTTGGATGAGGACGCGATGCGAAATGTTTGGTCGTGCGGCAACTGTAACACCGATTTCGTTGATTTAAATGATTTGAAAATGCACATGGTGACGCATTTAGCTAAGATATCATGTCCAGTTGATGAGTGCGGCTTTCAGTACTCGAATTTCCATTACTTCTACCAGCATATACGAAGAAATCATTTGACAACGAAGTTGTTGAACTGTAAATACTGCGGAAAGTCGAATATAACAGATTTCAGAACTTTGCAGAATCATTACCGATCCGAATGTACAGCCAAGAAGTTCAAATGTGATTTTTGTGATCGATCATTTTTCACCGACAAGTCGTGGAAAACACACATTGAGGTACGTCATATAGAAAAGAAGTTCGTCTGTGAGCTATGTGGCAAATCATTTGCTCAAATCACTGAATTGAAGATTCACACGAGAATGCACACTGGCGAACGACCATTCGAGTGCACAATATGCAAAAAAGCTTACAAAACCGCTAGTGGTCGAGCTTCACACATGGACTCGCATTCCAATAAAGTGTTTCCGTGTGAAATCTGTGGAAAACAAATGAATTCAAGACGAAATCTAGTAACACACATACGCAGGCATACCGAAGAGAAGAGGCTTAAGTGCGAAGTATGTGGCAAGAGATTCTTCACCAAATGGCATTTGAATTTGCACGCATCGAAGATGCACAACAACATAAAGTAG
- Protein Sequence
- MDCSLELDPATVCRMCLEPQENPYSIFTKHIIEGNVKTLPDIIFACFSIDVIANPILPKNICEGCKTSIIQFFKFRENVIRTEKILAELFKLEPDVIFKEEQEIFTADEYGELPIDQTLVEADIEFDDQYVEEEVQLDGVCEEPFQEYDTEFNEIENTIEAYVPDKFDDEKPELEKPESEKLESEKEDELTTMELIDEATTQYGEFDEEAYINDIPETPQTEDEDEMVISEQLEDDVDFEPENEPKKRRYRRCTKNGETRPTLTLMCKICNKRIKIDDENHDKLHDSYALIVAAETFVQCHRCDQVFITTEELQTHLQQMHYDDNEVEEDLFSDFQLLDEDAMRNVWSCGNCNTDFVDLNDLKMHMVTHLAKISCPVDECGFQYSNFHYFYQHIRRNHLTTKLLNCKYCGKSNITDFRTLQNHYRSECTAKKFKCDFCDRSFFTDKSWKTHIEVRHIEKKFVCELCGKSFAQITELKIHTRMHTGERPFECTICKKAYKTASGRASHMDSHSNKVFPCEICGKQMNSRRNLVTHIRRHTEEKRLKCEVCGKRFFTKWHLNLHASKMHNNIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301158;
- 90% Identity
- iTF_01301158;
- 80% Identity
- -