Basic Information

Insect: Rhingia campestris
Gene Symbol: -
Assembly: GCA_932526435.1
Location: CAKOBE010000041.1:7111393-7113450[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-05 0.0021 19.3 1.8 5 23 268 286 265 286 0.94

2 9 5.6e-08 7.8e-06 26.9 0.6 1 23 292 314 292 314 0.98

3 9 6e-05 0.0084 17.4 1.9 1 23 320 342 320 342 0.98

4 9 1.1e-05 0.0016 19.6 2.4 1 23 348 371 348 371 0.97

5 9 0.0098 1.4 10.4 2.4 1 23 381 403 381 403 0.96

6 9 0.00093 0.13 13.6 6.2 1 23 475 497 475 497 0.98

7 9 0.00095 0.13 13.6 3.4 1 23 505 528 505 529 0.96

8 9 0.00028 0.04 15.2 0.0 2 23 537 559 537 559 0.95

9 9 0.021 2.9 9.4 2.7 3 23 566 586 565 586 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-05	0.0021	19.3	1.8	5	23	268	286	265	286	0.94
2	9	5.6e-08	7.8e-06	26.9	0.6	1	23	292	314	292	314	0.98
3	9	6e-05	0.0084	17.4	1.9	1	23	320	342	320	342	0.98
4	9	1.1e-05	0.0016	19.6	2.4	1	23	348	371	348	371	0.97
5	9	0.0098	1.4	10.4	2.4	1	23	381	403	381	403	0.96
6	9	0.00093	0.13	13.6	6.2	1	23	475	497	475	497	0.98
7	9	0.00095	0.13	13.6	3.4	1	23	505	528	505	529	0.96
8	9	0.00028	0.04	15.2	0.0	2	23	537	559	537	559	0.95
9	9	0.021	2.9	9.4	2.7	3	23	566	586	565	586	0.96

Sequence Information

Coding Sequence: ATGAATTTCAAAGTCGATATATCGGTGTGTCGAGTCTGCATGAAATCCGAAAACGGAATTTCACTATTCAAACAGCCCGGCCTTCTAGAGAAATTTGTTTACACCACTAAACACAAGGTCAGAGAAGACGATAGTCTGCCTTCGATTTTATGCAAGAAATGCGTAGCACGGCTGAGGGTTGCATACGAATTCTGCCGCTTAGCAAACACATCGGAGAAGCATTTGCGGAATTTTCTTAGTAAGATCACTTACGACTTTCAGGAGGTAACCAAGGGAATACCTCAAGAGGACGAAGATGGTTTGGTGGATGAAATGGACGGAGATAATAATGTTCACGCACTTATTGCTGAAGCTGGCGGATTCGACCAGTATGATGACCAGGCACCATCGCCAAAGCAACCCACGATGGATGTAACCGAAGAGCTAGAGGTGGTCGAGGTGAGGGATGACGTTGTTACTAAGACTGAAGTGTTTGATCATGAAATCTACATGGAGGAGTTCCACGAGATAATCCAGGAAGACAACGCTGAGCCGCAGATGTACTTGGACGAGAACTCGATCGAGGAACTGCAATTGTATGAGGAAGGTAATGAACTGCTTGACGATGAGGAGAGGGTTGAGGAGGAGAATGTGCAGTTGGCCGATCAAGATTTCCTTTCCGAAAGCGAAATCAAAGAAGAAAAGTACTCCACAAAAAAGACGAATAAAAGACCCACTAAAAGAGGACCTATACGCAAATCAAGAAAGATGTCGGGGGAATCGCCCGCTGTTAAGCTCGAAGGAAAGTCGAACATCTGCATCAAGTGCAACAAGGATTTCAGCACCAAAACTAATCTAATGCGACACATGAGTACACATGACGGAGTGAGACCATATCAGTGCAACGTTTGTGGGAAAGGATTCACCCAGAATGGCTCACTGAAACAACACATGTTCATCCATACTGGTGAACGGCCGCATGTGTGTCCCGTCTGTCAGCGTGGCTTCACACAAAGTAAGAGCTTGATATTCCACATGCGACGTCATACCGGTGAGAAACCATTTACATGTGAGCAGTGCGGTATCAATTTCCGTCAAAAGGATGGACTGAAGCATCACGTCCAAAAGTACCACAGCGGGGAACAGTCTACACCTGAACGTCACGCATGTTGTGTATGCGCCAGGGTCCTTTCGTCAAAGTACTCACTGGGAGTGCATATGAAAAAACACGTCAACAAAAAGGAGCGCGTTTTCGACAAGAAAACCAATATAGACACTGACTCTGAGGTTACAGTAATTATCAAAAAAAATGATTTGAAAGGTGATAGCTTACAACCCGAATCAGAACCAGAACAAGAAACCCATATTTTATCATCCACACCACCGCCGGCATCCGAAGAACAGCAGACTGCCACCCATACCTCGATTTTGCGCACCAAGCAGTTTCAGTGCCGCAAATGCTACAAATCGTTTCACATCAAGCGAAATTTGCTGCGACATTTGAGAAACCACAATGTCAGCACTCTGCAACTGCACGAGTGTGGTGATTGTAAAATTGGATTCGATACAAAACGATCGCTCAAGCTGCATCGTCAGCGCGAGCACCATGACGTAGTTGATGACTTGAACAGCTGCGAATATTGTGACGCACCATTTGCTACGCTATCTGATCTGAGCGAGCACATAGCCAGTGTACACGACGCAATTGAAGAAGATTGTCCACATTGCAGTGCGCACTTTAAATCACAGAAGCTATACTATGACCATTTGCTGGAACATGAGCACATGTTAGAGGATTAG
Protein Sequence: MNFKVDISVCRVCMKSENGISLFKQPGLLEKFVYTTKHKVREDDSLPSILCKKCVARLRVAYEFCRLANTSEKHLRNFLSKITYDFQEVTKGIPQEDEDGLVDEMDGDNNVHALIAEAGGFDQYDDQAPSPKQPTMDVTEELEVVEVRDDVVTKTEVFDHEIYMEEFHEIIQEDNAEPQMYLDENSIEELQLYEEGNELLDDEERVEEENVQLADQDFLSESEIKEEKYSTKKTNKRPTKRGPIRKSRKMSGESPAVKLEGKSNICIKCNKDFSTKTNLMRHMSTHDGVRPYQCNVCGKGFTQNGSLKQHMFIHTGERPHVCPVCQRGFTQSKSLIFHMRRHTGEKPFTCEQCGINFRQKDGLKHHVQKYHSGEQSTPERHACCVCARVLSSKYSLGVHMKKHVNKKERVFDKKTNIDTDSEVTVIIKKNDLKGDSLQPESEPEQETHILSSTPPPASEEQQTATHTSILRTKQFQCRKCYKSFHIKRNLLRHLRNHNVSTLQLHECGDCKIGFDTKRSLKLHRQREHHDVVDDLNSCEYCDAPFATLSDLSEHIASVHDAIEEDCPHCSAHFKSQKLYYDHLLEHEHMLED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01301123;
90% Identity: iTF_01301123;
80% Identity: -