Basic Information

Insect: Rhingia campestris
Gene Symbol: -
Assembly: GCA_932526435.1
Location: CAKOBE010000207.1:658318-660919[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.027 3.7 9.0 0.1 1 23 226 248 226 248 0.97

2 7 0.097 14 7.3 4.6 1 19 514 532 514 536 0.91

3 7 6.9e-07 9.6e-05 23.5 0.9 1 23 542 564 542 564 0.98

4 7 7.4e-05 0.01 17.1 2.3 1 19 570 588 570 589 0.98

5 7 5.3e-08 7.5e-06 27.0 1.5 1 23 599 621 599 621 0.99

6 7 2.4e-06 0.00034 21.7 1.9 1 23 627 649 627 649 0.99

7 7 8.4e-08 1.2e-05 26.3 0.9 1 23 655 677 655 677 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.027	3.7	9.0	0.1	1	23	226	248	226	248	0.97
2	7	0.097	14	7.3	4.6	1	19	514	532	514	536	0.91
3	7	6.9e-07	9.6e-05	23.5	0.9	1	23	542	564	542	564	0.98
4	7	7.4e-05	0.01	17.1	2.3	1	19	570	588	570	589	0.98
5	7	5.3e-08	7.5e-06	27.0	1.5	1	23	599	621	599	621	0.99
6	7	2.4e-06	0.00034	21.7	1.9	1	23	627	649	627	649	0.99
7	7	8.4e-08	1.2e-05	26.3	0.9	1	23	655	677	655	677	0.99

Sequence Information

Coding Sequence: ATGACCATTCCAAATCGTGAACAAGAATTCATTGATCATACTCTTCTTGGACCTGAATACATCACAAATACCATATCGAATAGTTTTATCATTGATTTGATGGAGCAACAGGACTCATCCGGTCAGACCGCCGCCGATTGTCCCATTACTTCGTTAAACACAAATGAAACATTTGCCGCAGAAGCTCAGCTACATACAATTTTCCAGTTTGTAAATAGGCAAGGACAGATTAGAACTCACGCTAATATCAGTGCAGAAAGCTCATCCGATCATCTCATTCAGCAAACTGACAAGGAGATATTGGACTCCGATTTCATGGCTATGCATGGAAACCTACTGAACGAACAAAATTTTAAAATATTCTGTAGCCAGCCGAGCATTTCAACCCAGGATGCTCTTGATCAAGACATAAATGTTTTACCTGTTCAAAGTCTTCCAGTGCCACCACCACCGCAAACACCAATCAGATGGCTAAAAAAGGAACTGTATGAAGAACCACTTGAAGATATACCCGAGATAGTAGGTCTTGTAGGAGGAACTGCCAAAAAAATATTGCCCCATAAAAAAAGAATTTCCAAAAAGCTTAAAATAATCGACAAATCCGATAATCTGTACCAGATCAATGGAGAATTGCCAACACCTAATAGTCGTTTGGTGATCACCAATGGGCCGCAGTTCGAATGTGAGTTGTGTGGCTCTATATCGGAATCTCAAGTACAATTTTTTGCTCATTTGAAAGGACATTATGAACCCAACCCAGTAGAAGACGCAAAGAGTGCGGTTGAGTCCACTCAACCGACACCCACTGTGATTCCAGCTCCCAAATCTGGTATTGAAAAAACGAGTTCTGAACAGAGTTCTGTCGCAGGACACCAAGTTTATAACGATGTAGAGCTCAATTTCGATACCTTTGGCGAAGTTGTTGCCCTTTCTACCCAAGACCAGCATGCCTCAAAAAATGTCCAGGATCAAGGTGAGATGAAAATTTTAAACCCAAGCGTGATAGCGAAGTGCATGGAGTACGTTGTTCAGGATACAACTCAAGCAGGAGTAAATGAGGTCgaatttagcgacaccgaggatatgcttgagggaattcgcggtgttgtggaTAAGGTATCAGTGGACGATACGTCAAATGACATCGATATGCCAGCTGCATCGGTTTCAAAAGAGTCCTGGTTCACCAACAGTGCTTTCAATGGATTGAGTTTTAAAGAGGAGCCCCTTAACAATGGGACATTCGAAAGAGTGTCTGAACTAGTTTCGATTCAGCCGATCCCAAGCGAAGAACGCGATGAAACAGATGCTCGAGTGACGTGTATGCAAGCAAATCAAGTCGATGATGAGTTCAACGAGCCCGACCATGCCAATGATGATAGTTCAAATGAGCACAATAATTCGCAAATTGAAAATTTTGAAAACATTAGTGAAAAACGAAAACGAGGCCGTCCCAAAGGTTCGACGAAAAGGAAACCCACCGCCGAGACTAAAACCGAGGATACTAGCTCGGATGAAATTGAAGGCACAAAACGAAGGCacgtctgcacaaagtgcaaccgagaattcaactcatgcaatgccctaaagtatcacgatctgtctcacaccggtgaacgccctcatcagtgtgatgtctgtggaaagtcgtttttcgctcaaagcgcattgaagtcacacataagagtacacactggtgacaagccatacgaatgtgacaagtgccatcggaaatttcgccagtggagtgatttaaaatatcacgatgtgtcgatacattcagatgaaaagaactaccaatgtgagttctgtggcaaatcgttctcccgcaagtactcgctcgtaatacatcgccgcatacacaccagcgaacgaaactacaagtgtgagttctgtccaaaatcgtttcgggcaagctcatatttacaaaatcatcgcaaaatacacacagGAGAAAAACCGTACGAATGTGACCAGTGTGGGAAAAAGTTTCGGGTCTCCGGTGACCTTCGGCGACATTTAAAAACGCACGAACGAAATAGACCGAGCGTTAAATTAAAAAAAGAAAAGGACAGCGATTTACTTGTTTTGACACCAAAAGGAAACGTTGATGCAAAACCAAATGTGGTCCATAAAATGGAATACCAGAAGGACAGTAAAGATGATTTACTGTTTCTAAACAAGATGACTAGTAAAATAGATCATCTATTTAAGACTGAAGAAGTGTTTATGGGAGACCAGGAACTCTCTTTTGTAACATAG
Protein Sequence: MTIPNREQEFIDHTLLGPEYITNTISNSFIIDLMEQQDSSGQTAADCPITSLNTNETFAAEAQLHTIFQFVNRQGQIRTHANISAESSSDHLIQQTDKEILDSDFMAMHGNLLNEQNFKIFCSQPSISTQDALDQDINVLPVQSLPVPPPPQTPIRWLKKELYEEPLEDIPEIVGLVGGTAKKILPHKKRISKKLKIIDKSDNLYQINGELPTPNSRLVITNGPQFECELCGSISESQVQFFAHLKGHYEPNPVEDAKSAVESTQPTPTVIPAPKSGIEKTSSEQSSVAGHQVYNDVELNFDTFGEVVALSTQDQHASKNVQDQGEMKILNPSVIAKCMEYVVQDTTQAGVNEVEFSDTEDMLEGIRGVVDKVSVDDTSNDIDMPAASVSKESWFTNSAFNGLSFKEEPLNNGTFERVSELVSIQPIPSEERDETDARVTCMQANQVDDEFNEPDHANDDSSNEHNNSQIENFENISEKRKRGRPKGSTKRKPTAETKTEDTSSDEIEGTKRRHVCTKCNREFNSCNALKYHDLSHTGERPHQCDVCGKSFFAQSALKSHIRVHTGDKPYECDKCHRKFRQWSDLKYHDVSIHSDEKNYQCEFCGKSFSRKYSLVIHRRIHTSERNYKCEFCPKSFRASSYLQNHRKIHTGEKPYECDQCGKKFRVSGDLRRHLKTHERNRPSVKLKKEKDSDLLVLTPKGNVDAKPNVVHKMEYQKDSKDDLLFLNKMTSKIDHLFKTEEVFMGDQELSFVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01301131;
90% Identity: iTF_01301131;
80% Identity: -