Rcam003177.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000023.1:4497646-4499692[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.46 64 5.2 1.0 1 23 177 202 177 202 0.87 2 13 0.00038 0.053 14.8 4.1 1 23 208 230 208 230 0.98 3 13 3.5 4.9e+02 2.4 0.4 2 9 236 243 235 245 0.86 4 13 0.23 33 6.1 0.5 2 12 265 275 265 280 0.80 5 13 8.8e-05 0.012 16.8 5.3 1 23 294 316 294 316 0.98 6 13 2.6e-05 0.0036 18.5 1.2 1 23 322 344 322 344 0.95 7 13 0.029 4.1 8.9 5.5 2 21 350 369 349 371 0.94 8 13 0.032 4.5 8.8 4.1 3 23 381 402 380 402 0.92 9 13 7.1e-05 0.0099 17.1 1.7 1 23 427 449 427 449 0.99 10 13 4.6e-06 0.00064 20.9 4.2 1 23 455 478 455 478 0.98 11 13 1.9e-06 0.00027 22.1 0.1 1 23 484 507 484 507 0.94 12 13 3.2e-05 0.0044 18.2 0.3 1 23 513 535 513 535 0.98 13 13 1.7e-05 0.0024 19.1 0.5 1 23 541 563 541 563 0.98
Sequence Information
- Coding Sequence
- ATGAATGCAGTAGAAAATATTTGCCGGACTTGTGGGAAGCCATCCGACGGCTCTGATCTCCATCCCATGTACACCTCAACTGAGTATCACAACGAACTGAAAATGATTCAGGAGGAATTCGATATTTGGGGTTTGAACATAGCCCAAAGTGACGGTCTACCTCAGAAGATTTGTCTCACCTGTTTCGATAGTTTCTGTCAAATCCACAATTTCCGCATAATTTGCCAGGAGGCGCAGATGAATTTCGGCGAGCTATGCACTGGCTTGGACATCATAATCAAACTCGAACCCCAGTATGGCGATGTAGACGTGAATTTCCCCGATGACTTTGAAGGCGAACAGACCATTACCGTTCAGGAGCACTATTACTTCCCTGGCGATGAACAAACAAAAGTGCCAGATCCGCTAGAACACGAAACACGTGAGAAACTTTTGGAAACGATTAATTCGGATGAAGAATGCCGCAAAGAGAGGGACCGCCGAGAAGCGCTTGACGAATTAAACGCCGAAATGCCCGAGTTTAAGCAGTATCAGTGCGAATACTGCATGGACGTGGTAGGTTTCGATGATCCCGAACTTCTGAACCAGCATTACAATACTATGCACTCCACGGATCTACCTTACAGCTGCCCTAAATGCGAAAAGTGCTTTGACACTAAGAGAAAGCGCAATAGCCATGCTAGGGTGCACTTCCGAATCATTCTCGAATGTGAGAAATGCGGTAAAAAGATTCGCGGTGGCAAACGAATGATGGCCCAGCACAATGAACTGAATCACATCGAAAAAGATCGCGAATGCACTACATGTGGGAAAAAGTTTCCCAAAATATCCCTGAAGAGGTTCAAGTATCACCAGAGTTGGCATGACGACACCAAGTTGCACAAATGCAAATATTGCGAAAAGAAATTTATCCAGGTCAATCATTTGATGGTGCACGAAAGGACGCACACCGGAGAGAATCCATTCCTCTGCAGCGAGTGCGGAATGGGATTCAAAAGTTCCAGCTTCCTTTATACCCACATGAAACAGCACGGTTTAGGTGAGCTGCAGTGCGTTCAATGTAACAAAAGATTCTTCCATCGACAAGGACTAAAACTTCACATGCAATGCCATGAGGGTGGCGGAAAAAAGTTGCCCCATTGCGAAATTTGTGATAAGAAGTTTGGGTCAATGATGAATCTTCGTTTGCATAATCATTCGAAGCATGGCGCGGTTGCTTCACAGGCGATCCTAAACGTTTTGAAAAAACGCAAAAAACAACAATCGTATATCAAACCATACAAGTGTGGTAAATGTCCGCAGTCGTTTGTTCTTCATATCCAGTTGGTCAAGCATTTGAAGACCCACGACGAACATCGACCGTATACTTGTGAGCAATGCCATAGGTCATTCAAACGCGAGGCCCATCTGAGGCTGCACATTAATTCGCTGCACTTGCACAAGAGGCCATACAAGTGTCAGATCTGTGGATGGGAATTCACACAGAGAATAAATCTTCGGGAGCACATTGCCGCAAAGCATGAGGATAAAAGGGATTTCAAATGTGAGATCTGCGGCAAGGCTTTTGCCATTCTCAAGACACTGAAGATACACAAGATGAACCATGTGGATAAGAAACCGTTTGTCTGTACCATATGCAACAAGAGTTTCACACTGATGGGTGTTTTAAAATCGCACATAAACACGCATCTTAAGAGGAAGGAAGCCGACGTGGCGGGAGGAGATATAACGGATATTGTTGTTTAG
- Protein Sequence
- MNAVENICRTCGKPSDGSDLHPMYTSTEYHNELKMIQEEFDIWGLNIAQSDGLPQKICLTCFDSFCQIHNFRIICQEAQMNFGELCTGLDIIIKLEPQYGDVDVNFPDDFEGEQTITVQEHYYFPGDEQTKVPDPLEHETREKLLETINSDEECRKERDRREALDELNAEMPEFKQYQCEYCMDVVGFDDPELLNQHYNTMHSTDLPYSCPKCEKCFDTKRKRNSHARVHFRIILECEKCGKKIRGGKRMMAQHNELNHIEKDRECTTCGKKFPKISLKRFKYHQSWHDDTKLHKCKYCEKKFIQVNHLMVHERTHTGENPFLCSECGMGFKSSSFLYTHMKQHGLGELQCVQCNKRFFHRQGLKLHMQCHEGGGKKLPHCEICDKKFGSMMNLRLHNHSKHGAVASQAILNVLKKRKKQQSYIKPYKCGKCPQSFVLHIQLVKHLKTHDEHRPYTCEQCHRSFKREAHLRLHINSLHLHKRPYKCQICGWEFTQRINLREHIAAKHEDKRDFKCEICGKAFAILKTLKIHKMNHVDKKPFVCTICNKSFTLMGVLKSHINTHLKRKEADVAGGDITDIVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301117;
- 90% Identity
- iTF_01301117;
- 80% Identity
- -