Rcam006437.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000043.1:1061409-1068750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.3 3.2e+02 3.0 0.2 2 23 186 208 185 208 0.94 2 18 0.033 4.6 8.7 4.3 2 19 250 267 249 270 0.92 3 18 0.042 5.9 8.4 0.1 3 23 311 332 310 332 0.95 4 18 0.0012 0.17 13.3 3.2 2 23 339 360 338 360 0.95 5 18 0.36 50 5.5 4.3 1 23 366 388 366 389 0.94 6 18 0.00094 0.13 13.6 1.5 1 23 395 418 395 418 0.95 7 18 2.2 3.1e+02 3.0 0.3 1 19 427 445 427 447 0.71 8 18 0.0081 1.1 10.7 1.6 1 23 465 487 465 487 0.97 9 18 0.076 11 7.6 0.6 1 23 492 514 492 514 0.98 10 18 1 1.4e+02 4.1 0.2 1 23 529 553 529 553 0.93 11 18 2.3e-05 0.0033 18.7 0.6 1 23 559 581 559 581 0.96 12 18 0.00093 0.13 13.6 1.3 1 23 587 610 587 610 0.96 13 18 9.6e-05 0.013 16.7 0.3 2 23 616 638 615 638 0.95 14 18 7.8e-07 0.00011 23.3 0.6 2 23 642 664 641 664 0.97 15 18 7.9e-05 0.011 17.0 0.4 1 23 670 693 670 693 0.95 16 18 0.012 1.7 10.1 2.0 1 23 699 721 699 721 0.97 17 18 0.00019 0.026 15.8 5.6 1 23 727 749 727 749 0.98 18 18 0.0005 0.07 14.5 0.5 1 23 755 780 755 780 0.95
Sequence Information
- Coding Sequence
- ATGGATGTAAATTGTTTGCGATGCAGAACTCCATTGGACAGTGACTGCCAATTAATATATGACGAAACTGGCATTGAACTGCAACTTGACAAACTTCTTGTCGAACACTTTGGAATTCACATAAAAAAAGACACTTCTGCAACCCAGGCTCTATGCGAAGATTGCGTCAATAAGCTTATAGAATTATATGATATAACACAAAAAAATCAAGAATCAGAAGCGACAGAACCAAATCAAAGCGATGAAGTCCATACCTTTGAAATTCTAAATATCAAAGAAGAGGAACCAATAATAATTGAAGAAGTGGATGTTGATCCGGAAAATGAGGACATTCAATTTGAAACCAACTATTCGGAATCCGAAAACTATCAACATGAGCATCACATAAGCTCTGCTGCAGAAGAAGATGAGGAATTCATTGGGTTTGATGATGATAACTGTGTCATCGTTAATGAAGCTTCGCTGTTAGATGAGTTGGAAGGTCTCACGATTCAAGAATATGCTCTTAGAGCAATTAAATCGGAATTGCAAGAGATTAATTATAATCAAGATACCGAGTGCAGATTGTGTGAGGAAGTATTGAAGAGTCATACAGCTGTCGTCATGCATATATCGATAAATCATGAAAGTGAGTCTAAAACGTATCCATGCATTATCTGTAATGCTGATAATTTCGAATCAATGAAGGATCTGGCATACCATATCGTAATCAAGCACTATAATCTAGAAAATGTTACGATTTATTGTATGTGCCCGGAGTGTGAAAAGCGATTTTCTAATTTCATGGAATATAACAAACATTCTTGTTACAAAGCAAAAACTGGAAACCGTTTAATACAGGAGTGTTCGCCATGCTCAATAAAATTTATTTCGAATAAGAGGTATCGTTTCCATTTACAATTTCATCTGCCCAAAAGAAGACCAAAAGCTTGTTTTGTCTGTGACATTTTGTTTTCCAACGAAAATGATTTTTTCGAGCACATCATGTACGCCCACGAGAGTAACGATACGCTGATTTGCAAAAAGTGCGATACAGTCTGTTCAACAAAAAAATTGTACAACAGCCACATGAGCCTTCATACTGCAATTCGAACTTTCTTTTGTGATTTCTGTTCAAAATCATATCTGTACAAACAAATGCTTGTAAACCATGTCAAACGGCATCACACCGATAAAGATTTGTTTCAATGCATAGTCTGTAAGAAATCACTAGCAAGTAAGCATCTTCTTACGAGACATATGCAACTGATACATTCCAAAGATACCAAGGAGAATATTTACAAATGCTCGCAGTGCGGACTGGTTGGAGCTTGTCAAGATGATGTAAAGGAACATATTGATGAAGAAAGTTGTCCAGAAGGAAAACTCACCATGGAATGTTTGTCAATAGCCTACGCATGTGAATTCTGTGAAAATGCCTACAGCAACGTGCATGATTTGAAAACTCACCGCACAACTCATGTTCAGAAAGTGTACACATGTTGGGTCTGTAAAGTTGGTTATTCCGAGTTTAAAAAAATAAAAACGCACATTCTTACCCACAATAAGGAGTTATTGCATAAAACGTTCCCTATCAACAGGCACTATGTGTGTGACTTTGATTCATGCGTGCAGAGCTACCTAACATGGCCATCATTACGCGCTCATAAGCAACGACACGCAGCGGATGCAAAATTTAGATGTGAAATTTGCAATCAAACATTTAGGACAATAAGTCTACTAAACAATCACGGAAAAGGCCATGAAAATAATGAGGAATTCCCCTGTGAATTTTGTACCAAAATGTGTACCTCGCAAATGTCACTAGCGGTTCATATTGCACGAAAGCATAATAATAATTCTATATCTTGTCCAACATGCAACACGACATACACCAACGAAGAGACCCTTAAGCAACACATAGAATCCTACCACGTTACAATAAAATGTGATCAATGCGGTAAAGTCACTAAAAACAAGCGGAATCTTGAAACTCATATACGGATGGTTCATGCCAAAGTGAAGCGATTTTTTTGTCCCACATGCAACAAGGGCTACTACAACAATAGCGATATGAAGGTTCACATAAAGGCGGCTCACGCAAATCAACACAAGTTTAAATGTGAGCACTGTGCCTTTACCTCAAGCTATGAAAGTTCATTCAATGCTCACCTTCTATTGCATGCATCGACCAAGCCATTCAAATGTGAGGAGTGTTCAAGGGAGTTTACGCGAAAAAACTGCTTCAAACTACATATGTTGAGACATTCCGCTGTTAAACCGTTCAGGTGTTCAGTGAAAGATTGCGACAAAAGCTTTGTTACTAGAGGGATTCTTAATACTCATTTGCGTGACAGTCATGCGGAGAGCAAGGACATACATGAGGTTAAATCACCTTCACCTCAACCAGTAAAACGTAAGATGCAAGGCGTACCAAAAGCTGCGCGTAAATCCAAATTAGTTAAATACATTGTTATAGAAGAAAACTCAGTCAGTGAACCCGTAGAAATGGGTGATGAAAGCAGCATCATTTTGTACGATGAATCACATACCGATCAAGAAATGGTGCTCCAATACATCCAAGAGGAAAATGATATAATAAAAGACGAAAATGAAGATTAA
- Protein Sequence
- MDVNCLRCRTPLDSDCQLIYDETGIELQLDKLLVEHFGIHIKKDTSATQALCEDCVNKLIELYDITQKNQESEATEPNQSDEVHTFEILNIKEEEPIIIEEVDVDPENEDIQFETNYSESENYQHEHHISSAAEEDEEFIGFDDDNCVIVNEASLLDELEGLTIQEYALRAIKSELQEINYNQDTECRLCEEVLKSHTAVVMHISINHESESKTYPCIICNADNFESMKDLAYHIVIKHYNLENVTIYCMCPECEKRFSNFMEYNKHSCYKAKTGNRLIQECSPCSIKFISNKRYRFHLQFHLPKRRPKACFVCDILFSNENDFFEHIMYAHESNDTLICKKCDTVCSTKKLYNSHMSLHTAIRTFFCDFCSKSYLYKQMLVNHVKRHHTDKDLFQCIVCKKSLASKHLLTRHMQLIHSKDTKENIYKCSQCGLVGACQDDVKEHIDEESCPEGKLTMECLSIAYACEFCENAYSNVHDLKTHRTTHVQKVYTCWVCKVGYSEFKKIKTHILTHNKELLHKTFPINRHYVCDFDSCVQSYLTWPSLRAHKQRHAADAKFRCEICNQTFRTISLLNNHGKGHENNEEFPCEFCTKMCTSQMSLAVHIARKHNNNSISCPTCNTTYTNEETLKQHIESYHVTIKCDQCGKVTKNKRNLETHIRMVHAKVKRFFCPTCNKGYYNNSDMKVHIKAAHANQHKFKCEHCAFTSSYESSFNAHLLLHASTKPFKCEECSREFTRKNCFKLHMLRHSAVKPFRCSVKDCDKSFVTRGILNTHLRDSHAESKDIHEVKSPSPQPVKRKMQGVPKAARKSKLVKYIVIEENSVSEPVEMGDESSIILYDESHTDQEMVLQYIQEENDIIKDENED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -