Rcam009532.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- GFI1_1
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000067.1:425589-427645[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.5e-07 6.3e-05 24.0 0.4 3 23 230 250 229 250 0.97 2 12 0.0001 0.014 16.7 3.0 1 23 256 278 256 278 0.98 3 12 0.00022 0.031 15.6 0.3 1 23 283 305 283 305 0.97 4 12 2e-05 0.0028 18.9 0.8 1 23 311 333 311 333 0.98 5 12 0.012 1.7 10.1 6.5 1 23 339 362 339 362 0.96 6 12 0.00011 0.015 16.6 4.8 1 23 406 429 406 429 0.98 7 12 0.5 70 5.0 3.7 1 23 438 461 438 461 0.96 8 12 0.00019 0.027 15.8 0.9 1 23 467 489 467 489 0.97 9 12 0.00016 0.022 16.0 5.3 1 23 495 517 495 517 0.98 10 12 0.00033 0.046 15.0 0.5 1 23 522 544 522 544 0.97 11 12 7.8e-05 0.011 17.0 1.3 1 23 550 572 550 572 0.97 12 12 0.007 0.98 10.9 5.7 1 23 578 601 578 601 0.97
Sequence Information
- Coding Sequence
- ATGGTCAAACTTTGGAAACAATGGTGTCGCCTCTGTGCTCGAGAGAATTCCAGTAACTCTCATAAAAATATATTAGTAACAACAGATGAGGCTACTTGGTCATTAGCCGATGCAATCAGCAAATGCTTTTCCGTAGAGGTCAACCAACAAGATTTAATTTGCAAAGCATGTTACCAGCTAGTGACACTAATAATTAATTTCCGTCAAAGAGTGATAAAAGTGCAGGCCATGTTCGCGGAGTTGTTTAACAGTTTGGAGGACCTTGATGCGGGACTGTTGAAGGTTCAATATGATCTCAACGAACTAGGCAATATGGATATGAACCTTAAATTGTTTACAAATAACCCAATAACTCAGCAGATCGAAATGAGTGCTGATTTTCGCGAGGAGATGATTGAGCTGGAGGAGGTAGAGTGCTTCAGTGAAAACATAATTAACCCCATCACTATTAAAACAGAACTTTCCCAAGAAGAAAAGAAGAATGTGCAAGATGAGTGCAGAGACCGTCTAGCATCGTCAACAAATGATGAATTTTCTGAAGATTGCAGCTCAAGTGAAACAGACTCCGATGAGGAAACAAAACAAAACCATAAGCTAAAGAAATCCAGTTATAAAAAATTACCAGGAAAGAAGCAAACGCGGGAAAACTATGAAAATACCCCTCTGTCGAAAACGGGTCCGAACATCTGTGCTGATTGTGGAAAGAGCTACAAGACGTCGAGTTCATTGAAAGAGCACATGGTAACGCACAATGAAGTTCGCCCATTTAAGTGCACATTTTGTGAAAAATATTTTAAAACTAATTCACGATTAAGGGCACATGAGGACACACACAGTCAGACCATCTACATCTGCACGATCTGTGGACAGCAGCTAAATACTCGTCGTACTCTAAAAATGCACATGGTTATCCACTCCGATCAAAAATGCTACAAGTGCGACGTTTGTGGCAATGAGTACAAACGTGCCAAGACCTTGAAGAAACATCTCCTCCTTCACAGCGGACTTAAGCCATATAAGTGTAACTTTTGTGAAAAGAAATTTGCTAATAATTCCAACTGTCGATATCATGAAAAGAAGACACACCCCTCAGGTGAACAGGCAGTGACAAACATAACCAGCGATAAAATTGATGAATACAATTCTAGAGAAGCAGAATCTCATGAAAAAAGAAATAAAATGACACTACCCAAGGCTAAAACGGAAAGGGAGATGTTCACATGTGTCGAATGTAATAAAGAGTTCTTCAGATTCCACAACTACCGACAACACATGCAGACAGAACACGAAGTCACACTGAATAAACCAGAGTTTCCTTGTTCAAAGTGCTGCAAGTACTTCACCACCCCTAAGCGACTGGAATTCCACATTCGAATCACGCACATGGGAGAGAAGCCGTTCGCTTGTGAGCAGTGCGGCAATTCGTACAAGTCTTTCAGCTCGTTGAAGGAGCATAAAGCAACCCACACAGAAGATTTCCCATTCAAATGCACATTTTGCGACAAACGCTTTAAAACCAAATTTCGTTTAAAGACTCACGAAGATACCCACAATAAAACAAACTACATCTGCAATATATGCGGCCTGCAGTTAAATACCAGACGTACGCTGAGAATGCACATGTTTGTACACTCCGATCACAAACCCCACAAATGTGACTATTGTGGCAATGAGTACAAACGTGCCAAGGCCCTTAAAAATCATCTAATCCTGCATACTGGCCTTAAACCCTATACATGTAACTTTTGTGATAAAACATTCGCCAATGGATCTAATTGTCGGACTCACAAAAAGAAGACACATCCCGTTGAGCTGGCTGCAATGGAAGCAGCCGGAAAAAAAAGTTTTAATGCTAACATTCCCAAGTTGGAACAATTGCGTGCTGCGTAA
- Protein Sequence
- MVKLWKQWCRLCARENSSNSHKNILVTTDEATWSLADAISKCFSVEVNQQDLICKACYQLVTLIINFRQRVIKVQAMFAELFNSLEDLDAGLLKVQYDLNELGNMDMNLKLFTNNPITQQIEMSADFREEMIELEEVECFSENIINPITIKTELSQEEKKNVQDECRDRLASSTNDEFSEDCSSSETDSDEETKQNHKLKKSSYKKLPGKKQTRENYENTPLSKTGPNICADCGKSYKTSSSLKEHMVTHNEVRPFKCTFCEKYFKTNSRLRAHEDTHSQTIYICTICGQQLNTRRTLKMHMVIHSDQKCYKCDVCGNEYKRAKTLKKHLLLHSGLKPYKCNFCEKKFANNSNCRYHEKKTHPSGEQAVTNITSDKIDEYNSREAESHEKRNKMTLPKAKTEREMFTCVECNKEFFRFHNYRQHMQTEHEVTLNKPEFPCSKCCKYFTTPKRLEFHIRITHMGEKPFACEQCGNSYKSFSSLKEHKATHTEDFPFKCTFCDKRFKTKFRLKTHEDTHNKTNYICNICGLQLNTRRTLRMHMFVHSDHKPHKCDYCGNEYKRAKALKNHLILHTGLKPYTCNFCDKTFANGSNCRTHKKKTHPVELAAMEAAGKKSFNANIPKLEQLRAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301104;
- 90% Identity
- -
- 80% Identity
- -