Basic Information

Insect: Rhingia campestris
Gene Symbol: -
Assembly: GCA_932526435.1
Location: CAKOBE010000400.1:56123-58638[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.96 1.4e+02 4.1 0.3 1 12 16 27 16 29 0.91

2 12 0.0044 0.62 11.5 0.2 1 23 314 337 314 337 0.90

3 12 0.00012 0.017 16.4 4.2 1 23 375 397 375 397 0.98

4 12 1.2e-06 0.00017 22.7 0.6 1 23 403 425 403 425 0.99

5 12 8.6e-05 0.012 16.9 1.1 1 23 432 454 432 454 0.97

6 12 5.9e-05 0.0083 17.4 0.4 1 23 460 482 460 482 0.97

7 12 3.5e-05 0.0049 18.1 0.3 1 23 488 510 488 510 0.98

8 12 9.9e-06 0.0014 19.8 0.3 1 23 516 539 516 539 0.95

9 12 8.2e-05 0.011 16.9 3.7 1 23 545 568 545 568 0.97

10 12 1.4e-05 0.002 19.4 3.5 1 23 574 596 574 596 0.98

11 12 0.00032 0.045 15.1 0.4 1 23 602 624 602 624 0.96

12 12 0.0017 0.24 12.8 0.8 1 21 630 650 630 654 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.96	1.4e+02	4.1	0.3	1	12	16	27	16	29	0.91
2	12	0.0044	0.62	11.5	0.2	1	23	314	337	314	337	0.90
3	12	0.00012	0.017	16.4	4.2	1	23	375	397	375	397	0.98
4	12	1.2e-06	0.00017	22.7	0.6	1	23	403	425	403	425	0.99
5	12	8.6e-05	0.012	16.9	1.1	1	23	432	454	432	454	0.97
6	12	5.9e-05	0.0083	17.4	0.4	1	23	460	482	460	482	0.97
7	12	3.5e-05	0.0049	18.1	0.3	1	23	488	510	488	510	0.98
8	12	9.9e-06	0.0014	19.8	0.3	1	23	516	539	516	539	0.95
9	12	8.2e-05	0.011	16.9	3.7	1	23	545	568	545	568	0.97
10	12	1.4e-05	0.002	19.4	3.5	1	23	574	596	574	596	0.98
11	12	0.00032	0.045	15.1	0.4	1	23	602	624	602	624	0.96
12	12	0.0017	0.24	12.8	0.8	1	21	630	650	630	654	0.91

Sequence Information

Coding Sequence: ATGACGGAAATCATAAATCAAATTGCAAACTACACAACCGAGTTGTTTAAATGCTTTCTTTGCGATCGAATATTTGCCGACGGCGACGAACCATGGCCTCTATTCGAGAAAAGGCTACTTGAAAGTGGTCAACACGATTGTGCACTGGCTACAATTTTATCATCCGCATTGGGAAAAGAACTCGACGAGGATAGCGTCCATTCAAAGTTGCTTTGCGATGAGTGCAATTTAATCCTTTTAGAATATGAGAGTGTAGAGAAAAAATTCTATCAGTTTCGCCTGAAAATTCTAACAGATTACAATAACACTGCCAAAGAAAACGGCCTCAACGTGGTATGGTTTGAGATTGGTGACGTCGAGGAACGAGCCCAGCAATCGGTTGAGACAGAGACAATGTCGCACGTTGAGGAAGTCAAAACTGAAATGGAGGCGGACGAGTCGCTTGTTGATCATATTCCTATGTTAGACAATCAAGAAATTTCCAGCTATGTAGTAGAGGATGAACAAGAGGAATATCAGGATATTCAAGAATTTACTACCGAGGCCATAGACGTAATTTCCAACAATGTACCTGACCAAGAGGAAGATCTGGAACAGATTGCGGGATATGCAGAACGGAATATTCAAGTCATTGGTGAAGAAATAAGCTACGAGCAGATAATAGAACAAAATTCCGTCATAAGTTACGATAACAGCGTAGATGCACCTGAATCGGGCATGGGCTACAAGAGCAGTGATGATGATGAATCTCCCATAATTCCGGAAGACATAAAGCCAACGAAGCAAAAACGTCCAGGACGTTCAATTAAACGAGAAACTGAAGCTATTGAGTTCGAAGTCATCGAAAACATGTACATATGTTCATTGTGCCCAGAGAAGAGCGCTCATGAACCGATGTTGTTTGTAAACCATTTAAAAAACATCCACAATTACAAGTTCTATCTGTGCGACATTTGTTACAAGGGATTTAGTAAACGAAACCAAATCAACGATCACATGGTTGAGGCGCACGGTGGCGGGGCAGAAGAAGGCGAGTTTCACTGTGAAACATGTATGCGAGTGTTTTTAAATCATCGCCAGTTTCGGATCCACAAACGACTTCACTACACTTCGACAAAGCAACACGAATGCTCCGAGTGTCATAAGAAATACAGCTCTAAGAATCTCCTCGATGAACACATGAACATGCATACAGGCAAACGTCCATATAAGTGTGCGTCATGTGATAAAGACTTTGCCTCAAAATACACACTGCAAGCACACATGAAGATACATACGAAGCGACCAAGACCCTACAGTTGTGATGagtgtgataaatcatttttaaatcaacagaacctggtgcaacacaaaaaattacattctgggctcaagtcatttgtctgtgaggtatgccagaaagcgtttggcactcaacacaacttggacgtccataagattgtgcattctggtaacaagccgtttatatgtcgaacatgcggtaaagcctttgcacgtcgagctgagatacgagatcacgaacgaactcacacgggagagaggccattccggtgtgatatttgcccattggcgtttgcccagagatcgaacctgatgacgcacaagaaagccactcacctaaatgataagaatcacaagtgccagttgtgcgatagatcctttaagcgacgaaggctgttagaatatcatacccagtcggcgcatacgggagaacgtccacacaaatgcgaggtgtgcagtgctacatttgtatatccagagcactttaagaaacatatgcgaatacacagcggcgtgaagccatatgcttgtgaggtttgtggaaagttgttcaacagcagggacaatcgaaacgcccacaggttcattcacagcgagaaaaagccttacgagtgtatggagtgcggaatgggtttcatgcgaaagccgttgttattgacacacatgcaTCAGACAAAGCATGTGAACAACACAATTATAGTGAATCAACCGCAAATTGGTATAAAAGCAGAAGAAACCCAAAAGGAGTCGACGGACGAAGAACTGGGACTGAATAGTCGAAATCTATCAATGGTCGATGAAGTAACTTACGATGAGGTGGTCACTTCTGACACAATACTTGTGGAAGATGGCGATGGGCAGTACATCAAGGATGAAGATGGGGAGGTGAAATATCTGCAGTTTACAGAGATGGATAAGGATGGACAGGCGACATACTGGGTGGATATAGGCGGCGATAAAGAAGATGATAATTAG
Protein Sequence: MTEIINQIANYTTELFKCFLCDRIFADGDEPWPLFEKRLLESGQHDCALATILSSALGKELDEDSVHSKLLCDECNLILLEYESVEKKFYQFRLKILTDYNNTAKENGLNVVWFEIGDVEERAQQSVETETMSHVEEVKTEMEADESLVDHIPMLDNQEISSYVVEDEQEEYQDIQEFTTEAIDVISNNVPDQEEDLEQIAGYAERNIQVIGEEISYEQIIEQNSVISYDNSVDAPESGMGYKSSDDDESPIIPEDIKPTKQKRPGRSIKRETEAIEFEVIENMYICSLCPEKSAHEPMLFVNHLKNIHNYKFYLCDICYKGFSKRNQINDHMVEAHGGGAEEGEFHCETCMRVFLNHRQFRIHKRLHYTSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCASCDKDFASKYTLQAHMKIHTKRPRPYSCDECDKSFLNQQNLVQHKKLHSGLKSFVCEVCQKAFGTQHNLDVHKIVHSGNKPFICRTCGKAFARRAEIRDHERTHTGERPFRCDICPLAFAQRSNLMTHKKATHLNDKNHKCQLCDRSFKRRRLLEYHTQSAHTGERPHKCEVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECMECGMGFMRKPLLLTHMHQTKHVNNTIIVNQPQIGIKAEETQKESTDEELGLNSRNLSMVDEVTYDEVVTSDTILVEDGDGQYIKDEDGEVKYLQFTEMDKDGQATYWVDIGGDKEDDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01301096;
90% Identity: iTF_01301096;
80% Identity: -