Basic Information

Insect: Rhingia campestris
Gene Symbol: -
Assembly: GCA_932526435.1
Location: CAKOBE010000024.1:3141661-3143698[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.017 2.4 9.6 1.4 2 23 108 129 107 129 0.96

2 10 0.035 4.9 8.7 2.4 1 23 209 232 209 232 0.92

3 10 1.6 2.3e+02 3.4 0.7 2 22 240 260 239 260 0.83

4 10 4.1e-07 5.8e-05 24.2 2.8 1 23 309 331 309 331 0.96

5 10 2.1e-08 2.9e-06 28.3 1.6 1 23 338 360 338 360 0.99

6 10 3.4e-05 0.0047 18.2 3.1 3 23 375 395 374 395 0.94

7 10 1.9e-06 0.00027 22.1 0.4 1 23 401 423 401 423 0.99

8 10 9.5e-07 0.00013 23.0 0.2 1 23 429 451 429 451 0.98

9 10 4.5e-07 6.4e-05 24.0 0.4 1 23 455 477 455 477 0.98

10 10 0.061 8.5 7.9 0.0 1 22 483 504 483 507 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.017	2.4	9.6	1.4	2	23	108	129	107	129	0.96
2	10	0.035	4.9	8.7	2.4	1	23	209	232	209	232	0.92
3	10	1.6	2.3e+02	3.4	0.7	2	22	240	260	239	260	0.83
4	10	4.1e-07	5.8e-05	24.2	2.8	1	23	309	331	309	331	0.96
5	10	2.1e-08	2.9e-06	28.3	1.6	1	23	338	360	338	360	0.99
6	10	3.4e-05	0.0047	18.2	3.1	3	23	375	395	374	395	0.94
7	10	1.9e-06	0.00027	22.1	0.4	1	23	401	423	401	423	0.99
8	10	9.5e-07	0.00013	23.0	0.2	1	23	429	451	429	451	0.98
9	10	4.5e-07	6.4e-05	24.0	0.4	1	23	455	477	455	477	0.98
10	10	0.061	8.5	7.9	0.0	1	22	483	504	483	507	0.89

Sequence Information

Coding Sequence: ATGGATACGTCAGAGAACGAGTGTTCAGATGATAATGAACATACCCCACAACAATCTAAAGATTATGAGGATTCATCTCAAACTGATGACGACAAGAAGAACCAGTCCATAACGAGAACAAGAACTCGCACTTATCGTAGGAATCTTGGACGGATGAAGAAAAAAAGAAGGATGCCTGCGAAATTAAATAAAAACCCAGTAAAGGGTGAAAAGGAACCGATATGCAAAGAGGCAATTCCCGAAAAGAATGACGTAGAACCAGACGTAATTAAGTCAGATATTGAAGAGGATGAGTGTATACCAAACGGCTGCAAGTCTATCGAGTGCTTCCTTTGCGGCTGTAGATTGGGTAAAATCTACAATTTACGACTACACATGAAGTCCCACACAAATGAAGAGTCTTCCGATATGCAAGTCTTTGAAAATTCAGAGATTTTCAACGTCCTTAATCCGCACAAGAGAAATATCGACTCTAATATCATAAGGAATTTTGTGATTCAAGAAATCAAAGCAAAACGTTACTCGCAATTCTATTGTATTCTCAACGAAGCCGCAGTTGAGCTCCACATTAGTGACTCCGAAACCGACTCGGATGGAGACTGTGATCTAATACCCCGCAATAACTACCGCTGCGAACTATGCAAAAAGAATTTTGATCGGCGCTACAAGGCGTTGTTTCATCAAAAGACAGCTCACGATAAGACAGAGTTTGCCGTCGAATGCGATTACTGTTTGAAAAAGTTCGTCTGCATGAATCTCCTCATCTACCACCTAAAAACTCAGTGTGAGAGCGACGAGAAGCCAGTCCCTTGTACGGAGCGCTTTATGAAATTTCTTTTGAAAGCCAACCTTGACTATTATGCGAGCTTAGCTCAAGCAAGAGAGCAGAGAAAATTGCATAAGTCCACCCAATTGCCAAAATCGTACACATGCACTGTATGCAATAAGACATTCACCCGACAGGAGCATCTCAATCGACACAGTGCTGTGCACTTACCCGATGAGATGAAATTCGAATGCCCCATATGTGATCGTCGCTTTAATCGAAAAGACAATATGCGATCGCATATGAAGACCCATACCGAGGAGGGAGCACGTAATGCAGAATCTCGGAAAATCCTTTGCTCCTGCTGCGGACGGAGTTTCAGTAGCAAATCAAACTACGTGGTGCACATGCGTCGTCACACCGGCGAGAAGCCCTACAAATGCGATGTTTGCGGAAAAGGTTTTCCCAAATCGACAGACCTGAACTCGCACAAGATCACACACACGGGAGAAAAGAATTTCGTGTGCACGATATGTACCAAGGCGTTTGCCAGATCAGCAGTTCTGTCAAAACATATGCGAGTTCACAATGCTCCATATCCGTGTTCATTTTGTACAAAAACCTTTCCGAAGCCAAGTGCCTTGACTGTTCATCTCCGAACGCATACCGGTGGTCGATTGTACGCTTGTGTTTCATGCAAAGCTTCCTTTGACACGAAAATTGACTTGGACGCTCACTTAGCATCGTCTGGTCATAACAATGAAACTAAGCGGGTGATAGTGGTGAAGGAAGTTATTGTGGCAAATAAAGCGAAGCCCATTGAGGAAAATCTGCCATCGCAGTCCTCATCAGCGTCAGAAATAAAAACGAATGATGATCCGCTCGAGATCAAGGAAGAGGAGTGGCGAACGACAAAAGTTAAAGTGCCTGCTAACGAAGCAATACAAAGCGTACTGCAAAGATCAACAAGTGCAACTGTTCCGGAGAACGCTGGGAGTTCTAATAGTGGATTACCAGAGGTAGTTTCTACTGCAAATAACGATATAATGCCTGCATTTTCGCCATTGGATGATGAATATGACGATGATATGCAGTTGGACTGGTAA
Protein Sequence: MDTSENECSDDNEHTPQQSKDYEDSSQTDDDKKNQSITRTRTRTYRRNLGRMKKKRRMPAKLNKNPVKGEKEPICKEAIPEKNDVEPDVIKSDIEEDECIPNGCKSIECFLCGCRLGKIYNLRLHMKSHTNEESSDMQVFENSEIFNVLNPHKRNIDSNIIRNFVIQEIKAKRYSQFYCILNEAAVELHISDSETDSDGDCDLIPRNNYRCELCKKNFDRRYKALFHQKTAHDKTEFAVECDYCLKKFVCMNLLIYHLKTQCESDEKPVPCTERFMKFLLKANLDYYASLAQAREQRKLHKSTQLPKSYTCTVCNKTFTRQEHLNRHSAVHLPDEMKFECPICDRRFNRKDNMRSHMKTHTEEGARNAESRKILCSCCGRSFSSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHTGEKNFVCTICTKAFARSAVLSKHMRVHNAPYPCSFCTKTFPKPSALTVHLRTHTGGRLYACVSCKASFDTKIDLDAHLASSGHNNETKRVIVVKEVIVANKAKPIEENLPSQSSSASEIKTNDDPLEIKEEEWRTTKVKVPANEAIQSVLQRSTSATVPENAGSSNSGLPEVVSTANNDIMPAFSPLDDEYDDDMQLDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01301095;
90% Identity: iTF_01301095;
80% Identity: -