Rcam001890.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000012.1:262644-270727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.8e-07 6.7e-05 24.0 1.6 2 23 176 197 176 197 0.97 2 10 1.1e-06 0.00015 22.9 1.6 1 23 203 225 203 225 0.98 3 10 5.7e-06 0.0008 20.6 0.7 1 23 231 253 231 253 0.96 4 10 1.2e-05 0.0017 19.5 0.9 5 23 265 283 259 284 0.91 5 10 6.5e-05 0.0091 17.2 2.9 1 23 289 311 289 311 0.97 6 10 3.2e-05 0.0045 18.2 3.6 1 23 317 340 317 340 0.98 7 10 0.0055 0.77 11.2 2.3 1 23 346 368 346 368 0.98 8 10 3e-05 0.0041 18.3 0.7 1 23 373 395 373 395 0.98 9 10 0.00054 0.075 14.4 0.5 2 23 402 426 401 426 0.96 10 10 7.6e-05 0.011 17.0 0.3 2 23 566 588 565 588 0.93
Sequence Information
- Coding Sequence
- ATGGAAATGACTGATATGTCAAACGAAACCTGGTCAGAGTTCGATGTGAAAACATCAAGTGGTTTTCAAAAACTTTTTGCCGAAAACTCAGTTTATCTAGGAAACTTTAGATTGTTTCAGGTGCCTGGCTATAATCTCCCAACCTGCGTCAAATGTTCGGAGCATTTGACTACAAACGGTCTAACTGCGAACTTTTATCAAACAATCAGACAAGACCTACCAACAACAACCAGTGTGGCCAATAACACAACATCTCCAACCGTTACGACAAACGGTGGTGGCGGGACCACAATCCAAGTGCAGCAACAGCAATCCCAACAGCAGCAACAAACGAGCCAACAACAACAACAGCAGCAGCAGACAACAACCACATCCGAGAATCATCAAGGCGGCGATATTAATAGCCAACAACTAAGTGGTTCTATGTCCAATCAAAACGGCGTGAAAAAAACCGAAACAATGTCATTTGATTTGGAGAAGACCATTCAAACCATAGACGTTGACATTCTGTTCAATGAGGAAGGATCATGCCCGCTCTGTTCGAAGACGTTCTCGAGAAAGTCATCGCTATTGACTCATATACGAAATCATTCGGCTGAAAGGAAATATGTTTGCACGTTTTGTCATAAGGGCTTCACACAAGCAGCGAATTTACGCAACCATGAGCGTATACACACAAATGATAGGCCTTATGTCTGCATTGATTGTGGCAAGACATTTACACAGATAACAAATTTAAACAATCACCGTCGACTGCACACGGGAGAGCGGCCATTTGTTTGCATCGAACAGGAATGTGGAAGATCTTTTGCGCAAGTTACAAATCTAAACAACCACATGAAGACACATCACAAAGTCCAACAGTATTGCTGCAATCAATGTCCGAAGAAATTCACTCAAGTCACCTCACTAAATCAGCACCTGCAAGCGCATGCCGGCATTACCGGATACTACTGCCCCCGATGCCCGGAGAAGACCTTCAAACAGCAATCGCAACTACACACGCACATGAAGTCGCACGGTCTGGCCTTTCCCTACGAGTGTCAAAAGTGCGATGAGAAATTCCTGCAACAGGCACACCTGGACCAACACAATAAAATGCACGATGAATTCAAATTCAAGTGTGACATGTGCCCGAGCTCTTTCAATCAAGAGGGGCTGTTAAAAAAACACGTTCAACGCCACATCGAAGGGAGGTACATTACATGTCCGGTAGCTAATTGTAACCAAGCATTCGCCGTTAAACAACACTTATCGAAACATCTTCTTACTCGCCATTCTCACAGTGAACTGCCGCCGCCAAAGCGTTCGAAAAAACAGCATCAACAACATCAGCTTCATCAGCCGGTGCAAATGATTGGGCAGCCACTGTCGATACAACACCACACACCAGGACAACGTGGTCGTCCGCCAAAGAAGAAGAATCAACAGCAGCAGCAACAGCAAATAAATCATACAAACGTTCAAACAATTAAGATCGAACTACCAACACAACATCAGCAACATGTTGGCGGCGGTGCTACAATTCAGATCAATCACATGCCACAGCAACAAACTAGCGGTGGCACTGAACTTGGCAGCCATACAACAGTCGTGCAGGCAACATTGATCAACAATAACAACACTAACAACAACGCCAACAACGCTCAACAACAACAAGAACAAGAACACATCGATAGCGGTGATAGCGATCTTAAATGCAATGACTGCGGTGTTATATTTTCAAATGAAAACGAACTGAGGGAGCATATATTCTACAAACATCCCGAGCGGAGATTCATGCAGGTACTGTTACAAAACGGTCAAAATTCCATATTGTCCGATGCTAGAAATTTGCTAATATTCAAGTATCAATAG
- Protein Sequence
- MEMTDMSNETWSEFDVKTSSGFQKLFAENSVYLGNFRLFQVPGYNLPTCVKCSEHLTTNGLTANFYQTIRQDLPTTTSVANNTTSPTVTTNGGGGTTIQVQQQQSQQQQQTSQQQQQQQQTTTTSENHQGGDINSQQLSGSMSNQNGVKKTETMSFDLEKTIQTIDVDILFNEEGSCPLCSKTFSRKSSLLTHIRNHSAERKYVCTFCHKGFTQAANLRNHERIHTNDRPYVCIDCGKTFTQITNLNNHRRLHTGERPFVCIEQECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPYECQKCDEKFLQQAHLDQHNKMHDEFKFKCDMCPSSFNQEGLLKKHVQRHIEGRYITCPVANCNQAFAVKQHLSKHLLTRHSHSELPPPKRSKKQHQQHQLHQPVQMIGQPLSIQHHTPGQRGRPPKKKNQQQQQQQINHTNVQTIKIELPTQHQQHVGGGATIQINHMPQQQTSGGTELGSHTTVVQATLINNNNTNNNANNAQQQQEQEHIDSGDSDLKCNDCGVIFSNENELREHIFYKHPERRFMQVLLQNGQNSILSDARNLLIFKYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01521342;
- 90% Identity
- iTF_01116602;
- 80% Identity
- -