Basic Information

Insect: Rhingia campestris
Gene Symbol: su(Hw)_1
Assembly: GCA_932526435.1
Location: CAKOBE010000138.1:871065-882720[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.18 25 6.4 0.4 2 16 134 145 133 153 0.54

2 13 4.3e-06 0.00061 21.0 0.3 3 23 205 226 203 226 0.92

3 13 0.4 56 5.3 0.3 1 23 232 254 232 254 0.96

4 13 3.5e-05 0.0049 18.1 4.7 1 21 261 281 261 282 0.94

5 13 1.3e-06 0.00018 22.6 0.8 2 23 294 315 293 315 0.97

6 13 0.00017 0.023 16.0 6.2 1 23 326 348 326 348 0.99

7 13 1.4e-05 0.002 19.3 1.1 1 23 354 376 354 376 0.97

8 13 2.9e-05 0.0041 18.3 0.6 1 23 382 404 382 404 0.99

9 13 0.0011 0.15 13.4 7.7 1 23 410 432 410 432 0.98

10 13 2.3e-05 0.0032 18.7 2.5 1 23 436 458 436 458 0.98

11 13 0.00026 0.036 15.4 0.3 2 22 470 490 470 493 0.90

12 13 0.25 35 6.0 0.8 2 23 500 522 499 522 0.93

13 13 2.2e-05 0.0031 18.7 0.4 2 23 528 550 527 550 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.18	25	6.4	0.4	2	16	134	145	133	153	0.54
2	13	4.3e-06	0.00061	21.0	0.3	3	23	205	226	203	226	0.92
3	13	0.4	56	5.3	0.3	1	23	232	254	232	254	0.96
4	13	3.5e-05	0.0049	18.1	4.7	1	21	261	281	261	282	0.94
5	13	1.3e-06	0.00018	22.6	0.8	2	23	294	315	293	315	0.97
6	13	0.00017	0.023	16.0	6.2	1	23	326	348	326	348	0.99
7	13	1.4e-05	0.002	19.3	1.1	1	23	354	376	354	376	0.97
8	13	2.9e-05	0.0041	18.3	0.6	1	23	382	404	382	404	0.99
9	13	0.0011	0.15	13.4	7.7	1	23	410	432	410	432	0.98
10	13	2.3e-05	0.0032	18.7	2.5	1	23	436	458	436	458	0.98
11	13	0.00026	0.036	15.4	0.3	2	22	470	490	470	493	0.90
12	13	0.25	35	6.0	0.8	2	23	500	522	499	522	0.93
13	13	2.2e-05	0.0031	18.7	0.4	2	23	528	550	527	550	0.96

Sequence Information

Coding Sequence: ATGAGTGTTTCATTAAACATTAAAGTTTCGGAATGTGTCTTAGGGTGTGTTGTTTACAAACATCTACATCGCCCTAAGGAAGAGTCAAGGTCTTTCAAACGTCCAGCAAACAGAAAGTTTCTTTTAAATGACCAGAACAGGCCGAGTAAAATTGTAAAAACAGACACACCAGACGATGACGTGCAGTATGTTGAAGATCCTCCAGGTCCATCCGATCACTACCTAATAACGGAAATTAAAGGCGAAGAGAATGACATTGATTTTGTACTTACTGACAAACGTTTTGTGGGTAAAAGCGGACCACCAGCAGAATGTATCGAAGAGATACAATTTGATGAGTTCCTAAATGACGAAGAAGATGCAAACGAGGGTGAAAACACTCAGGAAATTGTGGAACATGTGTGCGGCAAATGTTTCAAATCGTTTCGATTGTTAAAAATAATGAAACGCCACTTGGCTTACTGTATTTTCAACAGTGAGATGGTGCAGCGACGAGATGACATGCTTAAGAATATTGAAAAGATTGAAAAAGAGGCCGTTGTTATGGAAAAGAAGGATATATGCTTTTGTTGTGGCGACAGCTATGATACATGTCATTTGGGTCACATAAACTGTACGGAATGCCCAAAAACCTTTAAAACGCAAATCGCACTTGAACGTCACATGTTTCTAATTCACTCGGAAAAGAATGATTTTCCCTGCACCACTTGCAACGGTCGTATTCGTACAAAACAACTCCTGGACTTGCACCTCGAGCAGCATAGAAATCGAGGAAAGCCATTTGCTTGCAAATCGTGTGGCAAGGATTTTACGCGACAATACCACTTGAAACGACACCACAAGTACTCACCATGTGGTGACGGACAAGCTGAGACGATGCAGTGTAAAGTTTGTGGCAAGGAATTCTTTCGGTTGGATAATCTGCGTGTGCATTTGAAGTCACACTTGGGACAGGGAACGCCCAAGAAAGCCGAGTACACATGTCCTTGCTGCAAAAAGTGTTTCTACAGCTTATCAACTCTTAACATTCATATACGTACCCACACAGGCGAGCGTCCATTTGATTGCGATCTTTGTGACAAGAACTTCCCGTCGCTGGTTTCGTTGAAAAAACACAGGCGATATCATACTGGCGAAAAGCCATACACTTGCGAAGTGTGTCAGCAAAATTTTGCTGTCAAGGAGGTTCTCAATAGACATATGAAAAGACACACTGGGGAAAAGCCACACAAGTGCACATTCTGCGATAAACGTTTCATACAAGCCACTCAGTGCAAGAATCATATGCGTACACATGAACGGCCATTTGAGTGTAGCCTATGTCCAGAGAAATTCAAAACTGAGAAGCAATTTGAAAAGCACTACAAAACCCACTCCAATAAAACACCAAAGAAAAAGCCCTCCGCCACGTGTGAAGATTGTAATATCAATTTTACAACTCAAACCCTCTTATTAAAACACTTGACGAGTGCTGCACACACCGAAAAAGCGAAAAAATACTGCCCCCAATGTGGTTTAGAATGTCCAAACTTGAAGTCTCTGGAGTTCCACTTACTTAAGGAGCACGAATCTGTCGACTTGAAGTGTCCCAAGTGCAATATAGTTTTTGAACAATATAATTCGTTGCAAAATCATTTGAAAAGCGCTCACGATATTTCATCCAGTGAGCCAACGCCAAAAACACCCGTCGAAAAAGCAGCTACGAACATTGTCAAGCCACCAGTTGTACAGTCAGTCAAACAAGAACGAAACGATTGTATTATTATCAAAGAGTTCATTGTTGACTCTCTTGACACCACAACTGATATTGCAGCAAGCGAACGAGAGGACTTCACAGTAATCGCTAGAGAGAACGAAATTTCGCCAGAGTTTAAAAAAGTCACAAAATACATGAACAAAAAATCTAATGATATCAGAGCCGAACTCAAAAAGTCACTGGCGAATTGCTTGCGGGAAGAACCAGCCAAGACGGAAAATGAAGACACCATGAGTCCGGAGGATGTGGAAATAAGTGAGAATGTTGGTAAATTGCTAGATATGCTTGTGGATGCTGAAACGCTTACGAAATTTGGCTGGCCAGACGATAGTGTTGAAAATGTTCTGTGTAAAGTTATTAAGAATTGCGGATATAATCTGGAACAGACAAAATTTACCGAAGACTATGGCGAAAGGATGAGGGAATTTGTGAAACTGCTGTTTACTGTGGTTATACAAAATGATTCAATTAAAGAACTCCTTAATAACTATCAAATTGATGAGGTAATCGATTTTGTCCTTTCCAATGAGGACGACGATTAA
Protein Sequence: MSVSLNIKVSECVLGCVVYKHLHRPKEESRSFKRPANRKFLLNDQNRPSKIVKTDTPDDDVQYVEDPPGPSDHYLITEIKGEENDIDFVLTDKRFVGKSGPPAECIEEIQFDEFLNDEEDANEGENTQEIVEHVCGKCFKSFRLLKIMKRHLAYCIFNSEMVQRRDDMLKNIEKIEKEAVVMEKKDICFCCGDSYDTCHLGHINCTECPKTFKTQIALERHMFLIHSEKNDFPCTTCNGRIRTKQLLDLHLEQHRNRGKPFACKSCGKDFTRQYHLKRHHKYSPCGDGQAETMQCKVCGKEFFRLDNLRVHLKSHLGQGTPKKAEYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCDKNFPSLVSLKKHRRYHTGEKPYTCEVCQQNFAVKEVLNRHMKRHTGEKPHKCTFCDKRFIQATQCKNHMRTHERPFECSLCPEKFKTEKQFEKHYKTHSNKTPKKKPSATCEDCNINFTTQTLLLKHLTSAAHTEKAKKYCPQCGLECPNLKSLEFHLLKEHESVDLKCPKCNIVFEQYNSLQNHLKSAHDISSSEPTPKTPVEKAATNIVKPPVVQSVKQERNDCIIIKEFIVDSLDTTTDIAASEREDFTVIARENEISPEFKKVTKYMNKKSNDIRAELKKSLANCLREEPAKTENEDTMSPEDVEISENVGKLLDMLVDAETLTKFGWPDDSVENVLCKVIKNCGYNLEQTKFTEDYGERMREFVKLLFTVVIQNDSIKELLNNYQIDEVIDFVLSNEDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01301089;
90% Identity: iTF_01301089;
80% Identity: -