Basic Information

Insect: Rhingia campestris
Gene Symbol: -
Assembly: GCA_932526435.1
Location: CAKOBE010000037.1:742601-759233[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00099 0.14 13.5 3.3 1 23 12 34 12 34 0.98

2 16 0.12 17 6.9 5.0 1 23 40 62 40 62 0.96

3 16 7.8e-05 0.011 17.0 0.5 1 23 68 90 68 90 0.97

4 16 0.0017 0.23 12.8 6.3 1 21 95 115 95 117 0.95

5 16 0.0068 0.95 10.9 5.8 1 23 123 145 123 145 0.98

6 16 5.9e-06 0.00082 20.5 2.5 1 23 150 172 150 172 0.98

7 16 0.039 5.5 8.5 0.5 1 16 178 193 178 195 0.93

8 16 4.9e-05 0.0069 17.6 0.0 1 23 320 342 320 342 0.97

9 16 0.00013 0.018 16.3 2.5 1 23 379 401 379 401 0.96

10 16 0.002 0.28 12.6 3.4 1 23 407 429 407 429 0.97

11 16 0.0045 0.63 11.5 5.8 1 23 435 457 435 457 0.98

12 16 2e-05 0.0028 18.9 1.6 1 23 463 485 463 485 0.96

13 16 0.00094 0.13 13.6 7.7 1 21 490 510 490 512 0.95

14 16 0.0082 1.1 10.6 9.0 1 23 518 540 518 540 0.99

15 16 1.3e-05 0.0018 19.5 2.3 1 23 545 567 545 567 0.98

16 16 2.7e-05 0.0038 18.4 2.6 1 23 573 596 573 596 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00099	0.14	13.5	3.3	1	23	12	34	12	34	0.98
2	16	0.12	17	6.9	5.0	1	23	40	62	40	62	0.96
3	16	7.8e-05	0.011	17.0	0.5	1	23	68	90	68	90	0.97
4	16	0.0017	0.23	12.8	6.3	1	21	95	115	95	117	0.95
5	16	0.0068	0.95	10.9	5.8	1	23	123	145	123	145	0.98
6	16	5.9e-06	0.00082	20.5	2.5	1	23	150	172	150	172	0.98
7	16	0.039	5.5	8.5	0.5	1	16	178	193	178	195	0.93
8	16	4.9e-05	0.0069	17.6	0.0	1	23	320	342	320	342	0.97
9	16	0.00013	0.018	16.3	2.5	1	23	379	401	379	401	0.96
10	16	0.002	0.28	12.6	3.4	1	23	407	429	407	429	0.97
11	16	0.0045	0.63	11.5	5.8	1	23	435	457	435	457	0.98
12	16	2e-05	0.0028	18.9	1.6	1	23	463	485	463	485	0.96
13	16	0.00094	0.13	13.6	7.7	1	21	490	510	490	512	0.95
14	16	0.0082	1.1	10.6	9.0	1	23	518	540	518	540	0.99
15	16	1.3e-05	0.0018	19.5	2.3	1	23	545	567	545	567	0.98
16	16	2.7e-05	0.0038	18.4	2.6	1	23	573	596	573	596	0.98

Sequence Information

Coding Sequence: ATGCATATCTTTGTCCACACGAAGCAAAAGAACTTTCCATGCCACTTGTGCCCGAAACGGTTTACAACCGTCTTTAAGCAACGTGAGCATTTGCGGAGTCACACCGGCATTCGGAATCATGCATGCCAAGTTTGCGATAGACGATTCTTGTCAAAACGCACACTGGTCTGTCACATGAGAACTCATACTGGGGATCGTCCCTTCAAATGTAATTTGTGCGACAAATCGTTCTACCAGAGTGCAATTTTAAGAACTCATATAGCATTGCACGAGGGCAAGTTGTTTGAATGTCCTAATTGTCGGAAAAAGTTCTGCAGCAAATCGCAAATGGAGCTACATATGAGTTGCCACATGGGCGAACGACGTTATAAGTGTTATCTCTGTTCAAAGACGTACAAACAGAAGTGCCATTTGGACGGGCACATAGGCACGCACTTGGGTGTGAAATTTACCTGCGAAATATGCCAAAAGCAGTACACAAAGAAGGGTTCACTGAAGAGTCACATGTATACACACTCTAAAGATCGACCGCACAAGTGTGAAATATGCTCAAAGGACTTCCAATCAAAAGACAGTTTGGACAGTTCATTTGAATCGTCAGCAGACGAATCGACCTATTGGGATGCATATAACTTCTGTACGAATTTAAGAGCAGAATCCACAGATTCCTTGCCAACTATTATCTGTATAGAATGCACGGACAAATTAAAAATTGTCTTCGATATTATAAGAAAGGCTATACATTCAGATCAAGTACTACGGCACGCGCTTGAAAAGATTCATCAAGAAGATGACTACGACGAGGCTGAATTTGAGGAACTAGATGAAAAAATTGAGTTTTTGGAGTTTTTAGACCAAGAAGTCCAAAATGATTCTGAAGGCAATCCCATAGAGGAGTTCGTTTACTTGGAGGAAGCTTACACACAATTGGATGATGACGATACAATATTAAAAGAGTATGCTTGTGATATGTGCGAAGAAGTGTTTTCTGACGAGAAAGATCTCGTTCAGCACATCATTGTACACGATACTAAAGTTGAGTCAGTTCCTGATCATGATGAATCTAGTCAGGGACAACAGTTATCATTAACAAACTCTGAAAACAATATAGAAAAAAAGTCAACCGACAGAGTATTCATGTGCGAATATTGTGCAAAAACGTTTTCATCTAAACAAAAACTGAAAATGCACACTTTTGTCCACACCAAGGAGAAGAACTTCCCATGCCATTTGTGTCCAAAACGCTTCACAACCATATTTAAGCAAAGAGAGCATTTGCGGAATCACGCTGGCATTCGCAATCACGTATGTCAAGTTTGCGATAGACGTTTCTTCTCCAAAAACACGCTAGTCTGTCACATGAGAACGCACACCGGCGATCGTCCCTACAAATGTAAATTGTGCGACAAATCGTTCACACAGAGTTCAATTTTGAAGAGCCATGTTTCATTGCACGAGGGCAAAATGTTTCCGTGTCCATCATGTCGCAAGACGTTCAGCCGTAAATCGCATATGCATCTGCATATGCGTTGTCACACGGGCGAACGACCTTATAAGTGTCATCTTTGTTCTAACACGTACAAACAGAAGTGCCATTTAGACCGGCATATCGACACGCACATGGGTGTTAGATTTACCTGCGAAATTTGCCAAAGGCAATACACAAAGAAGGGTTCACTTAAAAGTCATATGTATACCCACTCTAAAGATCGACCTTACAAGTGTGAACTATGCCCTAAGGACTTTCAATCGAAAGACAGGTACAAACGTCACATGAGGAATACTCACAAAAGAAACCATGTGTCTCTAGATGAATTCAATTCGGACGGTAGCCTTGAAAATGAAGAGTACGACGTGGATGATCCAAACGACTCGAGTGGGCAGATAAATATATGTTGA
Protein Sequence: MHIFVHTKQKNFPCHLCPKRFTTVFKQREHLRSHTGIRNHACQVCDRRFLSKRTLVCHMRTHTGDRPFKCNLCDKSFYQSAILRTHIALHEGKLFECPNCRKKFCSKSQMELHMSCHMGERRYKCYLCSKTYKQKCHLDGHIGTHLGVKFTCEICQKQYTKKGSLKSHMYTHSKDRPHKCEICSKDFQSKDSLDSSFESSADESTYWDAYNFCTNLRAESTDSLPTIICIECTDKLKIVFDIIRKAIHSDQVLRHALEKIHQEDDYDEAEFEELDEKIEFLEFLDQEVQNDSEGNPIEEFVYLEEAYTQLDDDDTILKEYACDMCEEVFSDEKDLVQHIIVHDTKVESVPDHDESSQGQQLSLTNSENNIEKKSTDRVFMCEYCAKTFSSKQKLKMHTFVHTKEKNFPCHLCPKRFTTIFKQREHLRNHAGIRNHVCQVCDRRFFSKNTLVCHMRTHTGDRPYKCKLCDKSFTQSSILKSHVSLHEGKMFPCPSCRKTFSRKSHMHLHMRCHTGERPYKCHLCSNTYKQKCHLDRHIDTHMGVRFTCEICQRQYTKKGSLKSHMYTHSKDRPYKCELCPKDFQSKDRYKRHMRNTHKRNHVSLDEFNSDGSLENEEYDVDDPNDSSGQINIC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -