Rcam022793.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000209.1:938215-959273[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00011 0.015 16.6 0.4 1 23 113 136 113 136 0.94 2 13 0.0013 0.19 13.1 1.3 3 23 143 164 142 164 0.95 3 13 1.5e-05 0.0021 19.3 4.1 1 23 173 196 173 196 0.96 4 13 5.3e-06 0.00075 20.7 6.8 1 23 337 359 337 359 0.98 5 13 9.9e-06 0.0014 19.8 2.5 1 23 365 387 365 388 0.95 6 13 5.7e-05 0.0079 17.4 1.4 1 23 393 416 393 416 0.92 7 13 1.2e-05 0.0016 19.6 4.7 2 23 426 447 426 447 0.97 8 13 0.0017 0.23 12.8 0.4 2 23 453 474 452 474 0.97 9 13 0.00014 0.019 16.2 0.8 1 23 480 502 480 502 0.96 10 13 2e-06 0.00028 22.0 2.3 1 23 508 530 508 530 0.98 11 13 4.4e-07 6.2e-05 24.1 0.5 3 23 538 558 536 558 0.96 12 13 2.8e-06 0.0004 21.5 1.3 1 23 564 586 564 586 0.99 13 13 0.00014 0.019 16.2 1.8 1 23 591 614 591 614 0.97
Sequence Information
- Coding Sequence
- ATGATTGATATAGAGATAGATAAAGTATGTAGAGTGTGCTTGCAAAGCCATCTTGAGCTCTCGCTGCTCTTCGACGAACAAAATGCTGTCGATGGCGTCTGCCTTTCCGAAATGATTTCTGAATGTACCATGTACACGGTTCGACGGCACGATGAATTCCCCCATCTTATATGCACCGAATGCATAAAGAGAGTCCAAAATGCATATCGATTTAAAAAGCAATACGAAACATCTCATCGGAAACTAATGAGGTTTCTAGATTCTGTCAACAAAGATCCAGTGGATATTAAGCCTAATGTCAATGAAAAGTCCATTCAAACGGACGAAGTTGCACTTTATCCATGCGAGAAGTGTGATGAAAAGTTCATTAACTACGACAAGTTGAAGGTGCACAGAACTCTCGCACATAAAGGCACTGGGAATCATTGTCGAATATGCCTTAAAACATTCCGCAGCATAGGATCTCTCAGAAATCATATTGCCGTGCGACATCCAGAAGAGGGCCATACAGCCGAGCATGTGTGTCGCGTCTGTGACAAGAAATTCACCCGCAAGAATCATGTCTTGCGCCACATGAGGGCTATTCATAAAATGGCAATTGTTGAGAATGAAGTTGACGAGGACAACGAAGAGGAGGATGAATCTGCTGATGAAATGTACAGTGAATATTGCTATAAAACGGAAGTCGTGGAAAACGAGACGCTTAATGAAACTGAGATCGACTATGGCATTATCAAGCAGGAGGCAGAAGTTATACTTTCACCGCAGTATGATGCTTCCTTTCATGAGGACCACATGAGCATTGGTGTAGATATTGCAGATACAAATCCATTTAGCAGTGACGAAGATGATCAACCCTTGTCGTCTCTGAAGTCGCTGGAAAAAGATAACTCAAATGCATCTACCGTAATTGTCCCCAAAGTGGAGCCGAGTTATTCTAACAACATTGTAAATTCAAATAACCCCAACATAACTACAGAATCTTACCAACTGGTAGGTGATAACAAATACAAATGCAATGTGTGCCACACTACCTTTTCAAGAAAAAGTCACGTGAGACGTCATCTCTTGTCACACAAAGAAGATAAACCGTACGCGTGTACAGTTTGCGGTAAGCGATTCGGCCGAACTGATCACCTTAAAGTACATGTAATCAAACACCACGATGAAAAACCGTTCCCATGCGATGAATGTGATCGTAAGTTTCCTACTTCATACCTGCTTAAGAGTCACAAACTGTTTAAGCACGATGAAAACAGAGCTGAGAGATCGGAAGTGTGTAAAATTTGCAATAAATTATTTTGCAATAAAAATTATCTTAAAAGGCACATGCGCCTGCACACGGAGAGAGGTTGGAAATGCAAGATCTGTCTAGCTCAGTTTGAATCGAAAGAGTCCTTAAAGGAACATGCAAAATCCCATGACAAAGAGAGACCATACTTGTGTTCAGAATGTGGTTCGCGTTTCCTTCGGAACGATTACCTGCAAGTGCATATGCGAAGACATAACGGAGAGAAGCCGTACAAATGTAAATACTGTGATAAACGTTTCCCAAGGACAACCGATTTAAATGTTCACGAGAGATACCATACCGGAGAGAAGACGCACCTGTGTAACATATGTGGTAAGGGATTTCAGCGAGCATATAATTTGGTTGTCCATATGCGTGTTCACACCGGTGAGAGACCATATCAGTGTCCATCCTGTCCAAAGAATTTTGCCCAGTGCAATGATTTAAAGGCACACGTACGCAGGCACACTGGTGAGAGGTACAAATGCGAGATATGTGGAGCTGGATTCATCCAAGGCTACCATTTGACGCAACACAAACATACTGTTCATGGAATTCAAATGGAATCTCGTACTGGGAGAGTTACAAAAGTATCATGTAACGGAGTGAACCAAAAATTTTACGAAGTTCACTTTGCCGATGCACTATTCTCATTGGTCAATCAAGCATTTTTAGTCACGTGA
- Protein Sequence
- MIDIEIDKVCRVCLQSHLELSLLFDEQNAVDGVCLSEMISECTMYTVRRHDEFPHLICTECIKRVQNAYRFKKQYETSHRKLMRFLDSVNKDPVDIKPNVNEKSIQTDEVALYPCEKCDEKFINYDKLKVHRTLAHKGTGNHCRICLKTFRSIGSLRNHIAVRHPEEGHTAEHVCRVCDKKFTRKNHVLRHMRAIHKMAIVENEVDEDNEEEDESADEMYSEYCYKTEVVENETLNETEIDYGIIKQEAEVILSPQYDASFHEDHMSIGVDIADTNPFSSDEDDQPLSSLKSLEKDNSNASTVIVPKVEPSYSNNIVNSNNPNITTESYQLVGDNKYKCNVCHTTFSRKSHVRRHLLSHKEDKPYACTVCGKRFGRTDHLKVHVIKHHDEKPFPCDECDRKFPTSYLLKSHKLFKHDENRAERSEVCKICNKLFCNKNYLKRHMRLHTERGWKCKICLAQFESKESLKEHAKSHDKERPYLCSECGSRFLRNDYLQVHMRRHNGEKPYKCKYCDKRFPRTTDLNVHERYHTGEKTHLCNICGKGFQRAYNLVVHMRVHTGERPYQCPSCPKNFAQCNDLKAHVRRHTGERYKCEICGAGFIQGYHLTQHKHTVHGIQMESRTGRVTKVSCNGVNQKFYEVHFADALFSLVNQAFLVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -