Rcam008492.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000055.1:3162007-3162540[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-08 9.9e-06 26.0 0.0 2 40 15 53 14 56 0.89
Sequence Information
- Coding Sequence
- ATGCCTCGCAGCAAGGAAGGTGTTAAAAGTACTCCTTTGAATGAAAATGCCTTACAGGAAGCTATCAACGATGTTCTCTACAATAAGGAAACAATCGGCAGAGCTGCAAAAGACCACGGTATTTCCAAAACAACTTTGTTTCGTCATCTTCAAATGCATCGGAAATCTGGCGATGCAACGTTCAAATACCATTCAGAAATTGCACACAAAAAAGTGCTTAATGACGAAGAAGAACTCGCATTGGTTGAATACCTTACCACAGCAGCAAAGCTGCATTATGGATTATCGAAAATTGATACAACCAAATTGGCCTTTAGTTTTGCAAAAGCAAATGGAAAAATTCTTCCGGAGTTGTGGATAAAGAACGAAGCAGCTGGCAAAGAGTGGATGATTGGCTTTCTTAAACGGCACCAAACTTTATCACTCAGAAAGCCAGAGTCGACCAGCCTTTCCAGATCAACAAATAAGGCCATTTCAAAAAGCTGCACCAAGAAAGGATCCTATTGCACGTGGAAGAAAGAGGGGAAGAACTAG
- Protein Sequence
- MPRSKEGVKSTPLNENALQEAINDVLYNKETIGRAAKDHGISKTTLFRHLQMHRKSGDATFKYHSEIAHKKVLNDEEELALVEYLTTAAKLHYGLSKIDTTKLAFSFAKANGKILPELWIKNEAAGKEWMIGFLKRHQTLSLRKPESTSLSRSTNKAISKSCTKKGSYCTWKKEGKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00724715;
- 90% Identity
- iTF_00240640; iTF_01300804; iTF_00724715;
- 80% Identity
- -