Rcam010711.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000076.1:2365663-2366268[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-09 1.5e-06 28.6 0.1 6 39 20 54 16 58 0.89 2 2 7.3 5.6e+03 -2.0 0.0 18 23 144 149 142 150 0.86
Sequence Information
- Coding Sequence
- ATGGTGCGAACATACAAACAAAAAACCGAAAGAAATAACATCAATGAAGTTGCTGTGGCTGCTGCAATATCCGATGTGGTGGAAGGCAGATTATCCATTAGAAAAGCAGCAGATAAATATAATTTAAAGCCTGCCACTCTTCAACACAGAATTAAAAAAAATAAGAAGGCAGATGAACAACATGTAAGTTTTTTATCGAAATATACCGTTAACCAAGTATTCAACACGGAACAAGAGCAGCATCATGGTTTAACATTAACTCAAGTACGACAGCTTGCATACCAATACGCAAAAAAACTAAATGCCAGATACCCAACATCCTGGGATGATAATAAAAGTGCCGGTTGTGATTGGATACATGGTTACCGTAAAAGAAACCCTAACATGAGCTTAAGAAAACCTGAGAGCACAAGTATTGCTCGATCATTTTCTTTCAATAAGGCTGCTGTGGACATAAAATACAAAAATCTAGAAGATGTTCTTTTAAGATTTAATTTTTCACCTAATCGAATAATTAATTTCGATGAAACCGGCATTACTACGGTCTTAAATACTCCAAAAATATTGGCTGACAAATCACAGCGACAAGTTGGTCAAATTGTTTAA
- Protein Sequence
- MVRTYKQKTERNNINEVAVAAAISDVVEGRLSIRKAADKYNLKPATLQHRIKKNKKADEQHVSFLSKYTVNQVFNTEQEQHHGLTLTQVRQLAYQYAKKLNARYPTSWDDNKSAGCDWIHGYRKRNPNMSLRKPESTSIARSFSFNKAAVDIKYKNLEDVLLRFNFSPNRIINFDETGITTVLNTPKILADKSQRQVGQIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -