Rcam002734.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- bab2
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000021.1:1584251-1586431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-12 7.9e-10 39.2 0.0 4 45 381 422 378 422 0.92 2 2 0.12 94 3.7 1.1 4 20 511 526 510 526 0.93
Sequence Information
- Coding Sequence
- ATGGGTGGCCCCACGACAACAGAAGGGCAAACCTACTGCCTGCGGTGGAACAATCACAAATCGAATCTAGTGGAAATCCTTGACGCTCTCATTAAAGTTGAAAGCTATGTGGATTGCACAATTGTCGTCGATGATCAGGTTCAATTCAAAGCCCATCGGGTTGTATTGGCTGCCAATTCTCCATATTTCCAATCGATTCTGCAAGACGTGCCCATGGATCACTGTAGTATTCTATTCCCTGGAGTGCAAGCATTCGAAATGCGTGCACTCTTGGAATACATGTACACTGGTGAAGTGAATGTCACACAGAGTCAAATTCCAAAAATTATGCGCATTGCTGAACAGTTGGAGGTGAAGGGACTCTTTGACATGGCCGATTTGAAGGAAAAATTCAATAAAATCGAAGAAAGTGGAAATGGTCCTTACTCCACATCAGGCAATGCTGCAGCTGCAGCAGCTTCATCGTCATCCTCAACGTCACATAATTCACAACAACAACAACAGCGCCCGATGAAGGAAAACAACGAAGCGAATTCATCGCCAATTATCACAACATCAACAATTAGCCCACCGGCTGCACCGACCAGCAGCTCATCACCGCCATACTCATACAAGTCCCCATATGCGAATATCTACTCAAAAAGTCCACAGCCTGGTCCATCACCAATGGATCGTAACTCATCTTGGCCAATTTCCCCAATTATGCCAAGTTCAATGCCCGCCAATGCTGCTGCTATGTTGAGTTCCGTTTACGAAGCTGCTCCTGATATGAACCCACTAAAGCGCAAGAAGCTCTCATCGATTTCAAGCATGTTGATGAATCGCGACACACCGATCTTGCGTAATGTTTTGGCCCAATCTGCAGATTCTTCACAGCCCATGCCATTGGTATCAGCCAAAAACGACAAACCAGAAAAATCACCACAAGTTGGCGCTGGACCAAATAGCTGCAATGGATCAGACTATAGTATAGATAAGAAAACAAAATACGATGAACCTCACTCACCCTACACGGACCGATCATACGAAGACGATGGACTTGACTCGCAATCATACCCAAGTGATAACCGCATGAATTCGTTCGGTTCACAACAGCAACAAAAGCCCGAATGGAAGCGTTACAAGCAATATACACGCAGCGATATTCTCCAAGCCATCGAATGCGTACGCAACGGTATGAGTGCCCTACAAGCATCACGTAAATACGGCGTCCCATCCCGTACTCTGTACGACAAAGTGAAGAAACTGGGCATCACTACCGGTCGTCCCATGAATCGGACAATCAAGCGCAGCCCAAGCAATGGAGGCAGTGGTGCCGCATTCCCTTATAGTCATGGCTATGGTCATGGTCAATCAGAAACTCTTATGTCATCCATGCATGATGGTGTCGATCGCGAAAAGGACCATGAACGTCATCTTCCCCCAACAATTCCTCATCCAGCTGCAGCCTTACTTGATCCCGCATTCTTGCAACAAGCTTTCGAAAGTCGTGGTGGTGATATTGCCGGCCGAGAAGCACTTCACGCAATGGCCTTGGCTGCTGCTGCACATGCTGCTGTAAATGGAATGTCAACTAGTCCTGGTACAAATGGCACCGCACGTTCACCTAGTCCTAGTTTCGCCATGAAATACGCACGGTCACAGAGTCCGGCAGCTAATCAGTACCGCGAACGGGAAATGATGATGGAGCATGAGAAGGAACGTGAGCGTGAAAGAGAACGCGAACGTGAACATGAGCGTAGGATGATCGAACGTGAGATGATGGAAAAGGAACGTTACAAGCGCGATATGGAAATGGAACGCGAACGCGAACATGAACGGGAATGCGAACGTGAACGTGAACGAGAGAGAGAGATGAACGATCGTTGTGGTGAGGATCGCGATGAGGAGGACGATCATGTTGAAGATTTATCGGTGGCTCGCAAAGGTAGCCCATCTCCAAATGCTAACAATCACCACGGTGTGATTGTGCCTCCAATGAGTACAAAACTTCCCGCCAACAGTAGTGACGACTTCAACGTAATTAAACGAGAAATTCTCACCGAAGATCGTGATTAG
- Protein Sequence
- MGGPTTTEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEQLEVKGLFDMADLKEKFNKIEESGNGPYSTSGNAAAAAASSSSSTSHNSQQQQQRPMKENNEANSSPIITTSTISPPAAPTSSSSPPYSYKSPYANIYSKSPQPGPSPMDRNSSWPISPIMPSSMPANAAAMLSSVYEAAPDMNPLKRKKLSSISSMLMNRDTPILRNVLAQSADSSQPMPLVSAKNDKPEKSPQVGAGPNSCNGSDYSIDKKTKYDEPHSPYTDRSYEDDGLDSQSYPSDNRMNSFGSQQQQKPEWKRYKQYTRSDILQAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSNGGSGAAFPYSHGYGHGQSETLMSSMHDGVDREKDHERHLPPTIPHPAAALLDPAFLQQAFESRGGDIAGREALHAMALAAAAHAAVNGMSTSPGTNGTARSPSPSFAMKYARSQSPAANQYREREMMMEHEKEREREREREREHERRMIEREMMEKERYKRDMEMEREREHERECEREREREREMNDRCGEDRDEEDDHVEDLSVARKGSPSPNANNHHGVIVPPMSTKLPANSSDDFNVIKREILTEDRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00241576;
- 90% Identity
- iTF_01300154; iTF_01301005; iTF_01300770;
- 80% Identity
- iTF_01300154;