Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.3e-14 1e-11 45.2 0.1 3 42 127 167 125 169 0.87

2 3 0.52 4e+02 1.7 0.0 27 37 198 208 189 214 0.84

3 3 4.4e-10 3.4e-07 30.7 0.0 3 39 237 273 235 279 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.3e-14	1e-11	45.2	0.1	3	42	127	167	125	169	0.87
2	3	0.52	4e+02	1.7	0.0	27	37	198	208	189	214	0.84
3	3	4.4e-10	3.4e-07	30.7	0.0	3	39	237	273	235	279	0.88

Coding Sequence: ATGTACCAACATTGTGCCAACGCTCCATCGGGGGAAACACTGCTAACCATTGAGCCTGAATATGAAACACTCCAACCGGTCCAATTACCAATAGATGAAACTACATTCACAGGCGATCAGTATATCATATACGAAGTCCAAGTCGACGCAGAACCATTGATAAACTATGTGATCACAGAAATAAAGAAACCCCCAGACGATGGTGACCCCCATCAACCGACGACTCCAGCCGCCGTTAAAAGTAAATTTCAAGAGGTACAGCTGAACTCTCCGGCCGCCGCTCCATATCTTATAAGTGTGCAAATACCAATCGAAGAGGATCATGAAGAATCAAAAGAAAATGCACCCAAATCTGGGCGAACCACAGCGGCTTCCAGAAAACAACTAGCTGAAGCTGTAGAAGCTGTTGTCAATAAGGAAATGTCCATTAGCAAAGCTGCGATTGCTTTTCAAGTGACAAAGAGCACCCTCTGGAAGGAAGTCAACAAACACACCAATCATCGGCGAAAAAAAGACAATACCGAGCTGAATCAAAAGATCACCGATCGCATCTGTGCGGGCGAATCTCTCTCGGCCATTTCGAGATCTTTAAATGTGGCCAAATCCACCCTGCATCAGCATAAAGTTCGACTAGCACAAAGTGGTCAACTGCCATCAAGTGTGCCCCTCAAACCACCGACAGATCCATCAGTAAAACTTGCCCAAAAGGAGCGGATCATAAAAGCGTTTCGCGGCTGCCGTGTGAATGGCATGTCGATTCGTTTTGCCGCCAAGTTGTACTCTATACCACCGTCGACATTATGGACCCATATAAAACGGTTTAAAGCATCGCAACAGAAGTCAGCTGAAGCCTCTACAAATGAGGCAGTCCATGTCAAGGACGACGACTATGACGATGACGACGACGAGGAGGAGGAGGATGATAAAATATCGCCCATGGAACAAATGGAAGTGGAGGAATTCGACATGAGCGAATATTGCAAGCGACAAGAAGCAACGGCCACCAGTGAAGATGGTGACTTGTTGATTAGTTTCGACTTCGAGTCGTTCGAGGAGTACATAAAAAGAGAGCTGGAATGA
Protein Sequence: MYQHCANAPSGETLLTIEPEYETLQPVQLPIDETTFTGDQYIIYEVQVDAEPLINYVITEIKKPPDDGDPHQPTTPAAVKSKFQEVQLNSPAAAPYLISVQIPIEEDHEESKENAPKSGRTTAASRKQLAEAVEAVVNKEMSISKAAIAFQVTKSTLWKEVNKHTNHRRKKDNTELNQKITDRICAGESLSAISRSLNVAKSTLHQHKVRLAQSGQLPSSVPLKPPTDPSVKLAQKERIIKAFRGCRVNGMSIRFAAKLYSIPPSTLWTHIKRFKASQQKSAEASTNEAVHVKDDDYDDDDDEEEEDDKISPMEQMEVEEFDMSEYCKRQEATATSEDGDLLISFDFESFEEYIKRELE

Sequence clustering based on sequence similarity using MMseqs2