Rcam002144.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- br
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000016.1:443488-444914[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.5e-13 2.7e-10 40.6 0.0 3 43 289 329 287 331 0.93 2 3 0.055 42 4.8 0.0 27 37 360 370 351 375 0.87 3 3 8.6e-18 6.6e-15 55.4 0.0 3 43 398 438 396 440 0.93
Sequence Information
- Coding Sequence
- ATGAACCACCTCAAATGGATGGGCCATACGGCGACCATCCTTGATATTCAGAAGACTCTTAAAAACGATCTGGGAACCTGTGACATTACACTCGCATGTCGTGGTAAATCGGTGAAAGCTCATCGCTTTATACTATCTTCATGCAGTGACCTATTGCGTGATCTATTAAGTGATGTACCGACAGGGGCTGAAGCCACCATAGTAGTGCCCGATGTAAAGGGTTATCTACTAGATAGTGTTTTGGGCTTTGTGTACATGGGAGAGACTAGTCTGTCATCGACTAACTTGTCTGAATTTCTTGAGGCCATTAGTATACTTGGCATCAAGAGTGCCATTAGTTTTGAATGTGCCAACACCAGTAGTTCGGCAAATGCTATTAAAAATGTTGCCGAAATGACCGAAATGGAAGAGGAACTAATGGAAGACGAGCCGGAGCAGGAAATTGTTGAAAAGGAGGATGAGGAGGATCAAACAGTAGCAGGGAACAGCAATGTTCGGGATTTGGAATTTCTCGAAGTGTATAATGATCAGGAAAAGATTAGCTACACTATAGAAAATATCACTCCGAACAATCCCAACGAGTACATTTTAACCGAAAGTTCTGGCACTTTTACTCTTACACCGAATGCAAAGATCGACGCCTCCGAGGAGGGCACACTTGTAGAGAAACAAGACGAAGACAATCCGATAATGGAGCACTATGTAGGTGATCCAATAGGTGACAGCAGCCAATGTTCGAGTACCGACATGAAAGATGACAAATGCAACAAGAAACTTAAGGATGAGTTCAGTGAATTTCAGGCCCTCAGTCCGGAAGACCCAAAGGTATTTCCAAACTTCAACGAAACACAGTCGGCACGAGTCGAAGCATTGGAAAACGCAGTCCTTGCCGTAGTCGATGAGGCTATGAGTTTACAGAAAGCAGCCCTCAAGTACAACATCTCAAAAACTGTTCTCTGGCGACGAGTGAAAAAACATCCGCTCTACATGAAGACTGCACGCGAGAATCCCCTTATAACGGCGGCATGTGAACGCCTGAAAAACGGTGATTCGCTAAAAAGTATAAGCCAGGCGCTGAACATTCCGATGTCTACTCTACATCGGCATAAAGTGAGATTGGCACAGGAAGGTCGACTACCAGAATATGTGACGTTCAAGAAACGCGGTCCAATGTCGAAAGAAATGCTCAAAGAGAAACTCACAAAAGCTGTGCAAGCATGCCTGGGTAATGGCATGTCGCAGAATCATGCAGCCAATGTGTATGATGTGCCAAAGAGCACACTATGGCGTCATTTGCAAAAGAAAATGGGTCGTTCTGATGAGGGAAACGATGTCTGTATTAAGGAAGAAGTCGTCGGCTTGCCCTAA
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKNDLGTCDITLACRGKSVKAHRFILSSCSDLLRDLLSDVPTGAEATIVVPDVKGYLLDSVLGFVYMGETSLSSTNLSEFLEAISILGIKSAISFECANTSSSANAIKNVAEMTEMEEELMEDEPEQEIVEKEDEEDQTVAGNSNVRDLEFLEVYNDQEKISYTIENITPNNPNEYILTESSGTFTLTPNAKIDASEEGTLVEKQDEDNPIMEHYVGDPIGDSSQCSSTDMKDDKCNKKLKDEFSEFQALSPEDPKVFPNFNETQSARVEALENAVLAVVDEAMSLQKAALKYNISKTVLWRRVKKHPLYMKTARENPLITAACERLKNGDSLKSISQALNIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLKEKLTKAVQACLGNGMSQNHAANVYDVPKSTLWRHLQKKMGRSDEGNDVCIKEEVVGLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_01301026;
- 80% Identity
- iTF_01300186;