Rmeg002812.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- -
- Assembly
- GCA_963989365.1
- Location
- OZ022414.1:11086075-11091691[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.024 3.5 9.1 1.4 1 23 53 76 53 76 0.89 2 14 0.096 14 7.2 0.6 2 23 87 109 86 109 0.91 3 14 0.2 28 6.2 0.2 5 23 116 135 115 135 0.92 4 14 0.02 2.8 9.4 0.5 2 21 190 209 190 210 0.90 5 14 3.8 5.4e+02 2.2 0.2 3 21 244 262 243 263 0.91 6 14 1.1e-05 0.0016 19.5 1.1 1 23 270 293 270 293 0.96 7 14 0.08 11 7.4 2.9 2 23 304 326 303 326 0.91 8 14 1.4 2e+02 3.5 0.4 2 21 358 377 358 378 0.92 9 14 0.052 7.4 8.0 3.2 2 23 386 408 385 408 0.95 10 14 0.0014 0.2 12.9 3.3 1 23 419 442 419 442 0.94 11 14 0.032 4.5 8.7 0.0 1 20 476 495 476 497 0.94 12 14 0.0023 0.33 12.3 0.8 1 23 504 527 504 527 0.94 13 14 5.4e-05 0.0077 17.4 0.3 1 20 732 751 732 752 0.96 14 14 0.037 5.2 8.5 0.2 2 23 824 846 823 846 0.89
Sequence Information
- Coding Sequence
- ATGGTTACCGCAAAAGCGATGGACAGTGTCATTGGCCGCACGCCGCACGGTCACTATCGTTACCTAGCTTCACCCCTTCGAAAAACACTCGGTCGTGAAGGGCCAAACATGCAGCTTGCACTTCAAAATCACAGAAAACGTTTCCGGGATGCAAAATATTCTTGCTATAGTTGTGGCACGAAATTTTCCGACGAGAAACAATTGGGAATTCACTTTGAACACGCCCATACGGATCTCACGATTCCCGGATACACTCAGAAGTGCCACCTctgtaacatgattttccctTCGGAGCAATTGAAAAAGAATCACATTGCCGGTGGTCATACATTTATAGAATCGACAATTTGTAACAAAAGATTGCCAACTGAAAGCTGGATGCGCCGACACTTTCGCGACGATCACTTGATAGGCTGTGACGAGAATGAGACATGTGCGTGCGGAAAAAATATGCACGTACCCGAAGCACtcgaggaacatttttttcagtattccATGCGCAGTTATGTATCAGCATTAAAGCCGATGACTATGGCGTTTAACTGTCGGCCATTAGTAAAGACTGAAGTTTGTAATGATTGCGGTAAAAGTTTCTGGCTAAAAACTTGTCTCGAAATTCATACCCGCGGCTGTAGCAAAATTATCGATGATTCGCCAGACCCAGTGACTCTGAAAATAATCTCAAGACATGGAATTGATCAAGGGCTAATTGATCTAAATGGAGTAATTTGTCGCGTTTGTTGCGCCGCATTTCCAACACAACAGGCACTCTTGAATCACGTGCGCTTCTACGCAAGAACGAAGCAATATCGTTGTAATATATGTGGCACATTTTTCAACGGGAAGAGTTTGTTAAAAACCCATAAACGTGACGCTCACACCTTCCACATCGCTTATTATTATAACTGTTACTGCACAATTTGCGATCAAGGTTTCACCAAGAAAATCTATCGACGCATACACATAGCGCATATACATGGTGAGAAATATCCGATTAAAATGATGAACAAACCATTGATTGATGATGAGCGTGCTTATGATAAAGGCTCTGAGCACGATGGTAGTGTTCGAAAGTGCCTAATTTGTAATCTCCAGTTTGGTAGCCGCAAACGTTTTATCGAACATACCAACTATTTCAagaacgaagaaataatcgtTTGTAAGATTTGCGATCAACGATTCGAAGGCCAGTACAATGCTCATTATCACTACAAATCGTGTCATTATCCCCCTGATATACGAGAAACTTACCAGCACAAATGTCCAATTTGTAAAGAAGGTTTTGCCTTCAAAATACATCTGAAAGCGCACGGCAAACATGTTCATAAGAAAAATATACACGGTATAAATCTGATGAGAAAGCGAAATAACGGAAAACTTGGTGATTGTTCCGCGGAGTTGTCTATGTCAGGAGTCGCCAGATTTCACATGTGTGCTATTTGCGAGGTGAGCTTTCCgaatgtcgattttttgaccgcTCATCAGATCGACTACGAGTTGGATGGAAAATTTGTCTGCCCACGGTGTGGTAGAAGATGTGGTACGTCAACTTTGCTGCTTGATCATTTGTCATTGAATCACTCGACCGCCATTAATGACAGTGTCAAGTGTCGAAGATGCGATGAATTTTTCCTCACCCCAGCAGTATGGCTATCGCACATCAAGCACTGTCACATGTCTGATGTGATACAACCATCGGAATTATATCTCGAGTCACAAATAAACTTCCCTAACAAGTTTGAAAAGACCAAGTTGAAATCGTTACCAGCGAATAATAAAATTTCCAGTGTTACGATCGAGGTACAAGTAGTGAACCAATCGAATCGTAATTTACCAGAAAAAGCTTCAATGAACTCGGAACAGGAAGGAAGTAAGACACTGCTTCCTACTGCCGGTACATTCAAGACAACAAATCAAATTAATCAACGTGAACAATTCAGGTCGATTAATAAGACGACTACACTCGATATCGTTGATACTAACCTTCCGGCAAAGCATGTAACAATTGACCAAAATTTAGTTACGACTACATCACCCATTACGAGTAAGGAAGGGGACACTTTTTCGAATCAAATGTCGATGTGCATCACTGGAATGAATTCACTTGCCCTATCGACAGTTGGTATACCGAAAGAAATTGCCAAAGAATCAAGTGCCCAATCAacgaataaattgtttattcGTCATTCGTTGTTTCGATGTGAAGTTTGTGGTTTTGCATTCAACAGCAAAAGTTCACTGGAGTCGCACAGAGACTGTCTTCATAACATAACATCAGAAACTACGGAGATGAATTCGCTCGTCGTTTTGACTGAGATAACCGGCATGAACATTACAAATCCAATGACCATTGGTCATTTAATCCCACTTCCGAAAGAACTTTCAGCACAGATGGTTCACAACAAATGCAATAAAGATGAGTCAAAGATGATAAGTAAATCTGCTGATCCTAACTCTGGGGGCCCACTAAGATGCGAACCTTGTGGTTTCGTTTTTCCCACTTGGAAAATGTTAATACTTCATAAACACTGGGTGCACAGCGAATCATTCCCGAATATCAAATGCACCGATGTCAGTAACTTGAATAGTCACGCTCCTTTACCATCAACAATTTATGATTATACAAGACACAATCCATTGTTCGTTGATAGTTTACCAATAGTTCAAAGCCCGCAGACACTTAGAGTAAACGTCGAACAACAGCAATCAAATATTATCATCCAGACTGTATCGATGCCAATTCCTGTCACTGAACCGAACATGATTATGAATGATACGGGTGAATCAGCATCCTACGTACAAGATAAACAGAACGAAAGTTCTGTCCATTCTGATGCGTTTGATAATGATAAATCGAAAATGAGTATATATTCCTTCGTCAAAACGATGGATAATTGCGAAAACAAGAGTGTGGTGAAAAGAAAGAATTGTTTAACGAATGAATGTGAAGCCgtgcagaaaaaaataaaagaagaaccTATCAACTGA
- Protein Sequence
- MVTAKAMDSVIGRTPHGHYRYLASPLRKTLGREGPNMQLALQNHRKRFRDAKYSCYSCGTKFSDEKQLGIHFEHAHTDLTIPGYTQKCHLCNMIFPSEQLKKNHIAGGHTFIESTICNKRLPTESWMRRHFRDDHLIGCDENETCACGKNMHVPEALEEHFFQYSMRSYVSALKPMTMAFNCRPLVKTEVCNDCGKSFWLKTCLEIHTRGCSKIIDDSPDPVTLKIISRHGIDQGLIDLNGVICRVCCAAFPTQQALLNHVRFYARTKQYRCNICGTFFNGKSLLKTHKRDAHTFHIAYYYNCYCTICDQGFTKKIYRRIHIAHIHGEKYPIKMMNKPLIDDERAYDKGSEHDGSVRKCLICNLQFGSRKRFIEHTNYFKNEEIIVCKICDQRFEGQYNAHYHYKSCHYPPDIRETYQHKCPICKEGFAFKIHLKAHGKHVHKKNIHGINLMRKRNNGKLGDCSAELSMSGVARFHMCAICEVSFPNVDFLTAHQIDYELDGKFVCPRCGRRCGTSTLLLDHLSLNHSTAINDSVKCRRCDEFFLTPAVWLSHIKHCHMSDVIQPSELYLESQINFPNKFEKTKLKSLPANNKISSVTIEVQVVNQSNRNLPEKASMNSEQEGSKTLLPTAGTFKTTNQINQREQFRSINKTTTLDIVDTNLPAKHVTIDQNLVTTTSPITSKEGDTFSNQMSMCITGMNSLALSTVGIPKEIAKESSAQSTNKLFIRHSLFRCEVCGFAFNSKSSLESHRDCLHNITSETTEMNSLVVLTEITGMNITNPMTIGHLIPLPKELSAQMVHNKCNKDESKMISKSADPNSGGPLRCEPCGFVFPTWKMLILHKHWVHSESFPNIKCTDVSNLNSHAPLPSTIYDYTRHNPLFVDSLPIVQSPQTLRVNVEQQQSNIIIQTVSMPIPVTEPNMIMNDTGESASYVQDKQNESSVHSDAFDNDKSKMSIYSFVKTMDNCENKSVVKRKNCLTNECEAVQKKIKEEPIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -