Rmeg012794.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- -
- Assembly
- GCA_963989365.1
- Location
- OZ022416.1:41477627-41481931[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.92 1.3e+02 4.1 0.5 2 19 514 531 513 534 0.89 2 13 5.6e-06 0.0008 20.5 2.8 1 23 586 609 586 609 0.98 3 13 1.4 2e+02 3.5 0.2 1 23 631 654 631 654 0.92 4 13 0.00046 0.065 14.5 1.0 1 23 690 713 690 713 0.98 5 13 0.014 1.9 9.8 2.4 1 23 722 744 722 744 0.95 6 13 0.52 74 4.9 5.6 1 23 760 782 760 784 0.84 7 13 0.48 68 5.0 0.3 1 23 791 814 791 814 0.89 8 13 2.3e-05 0.0032 18.6 0.5 1 23 829 851 829 851 0.98 9 13 2.3e-06 0.00032 21.7 0.5 1 23 857 879 857 879 0.99 10 13 0.12 17 6.9 4.3 1 23 885 907 885 907 0.97 11 13 0.4 57 5.2 6.1 1 23 913 935 913 935 0.92 12 13 2.2e-06 0.00032 21.8 4.5 1 23 941 963 941 963 0.99 13 13 1.9e-05 0.0027 18.8 1.8 1 23 969 992 969 992 0.96
Sequence Information
- Coding Sequence
- ATGTTCACGTTGATCCTTGAAACTCAGGAGGGACATCAAATCGAATTGAACGTTCAGCCGGAGGACACTTTTAAAGATTTGAAAAGTCAATTCGTGCATGGTGAACTCGTCGGTCTGTCGGATTCGCTACAACAACTAATCACCGGCGGAGTTAGCGTTTTAGAAAACACCAAGATTTTCGACTTTGTTGCCGGCAAtgCTCAGGAATGGCTGGGCACGAGTGCATTAGCGGAGGAgcctacattttttcaatcttcTCCGAAGGATGATCGATCGCAAGAACGCCACCCTAGGGGCAGTGTCAATAACCGAACCACGATGCCCGAACAACCTCCTTTTCCATTGCCGGCTGATTGCAATAGGCTATCTGTCTTACCTACGGAAATAGAAAGACTCGATCCGTACAATAAAGTTTTTTCTTCCGACATGGGTGCAcgccaaagtttttttttatgcagtAATCATTACGGCCAAGAATCATTGATTTTACTTACGGACGGTTCCAGCACTCAACAGGCACCGACGTTCACTTCgcaaaaactaaaaaatcatcgatcGAAATCATACCCGACGGAGGATATAATTTTGACTAAAGACGCGCCCGAGgaagaaaacgaaaaagaaaagtcAAATGTAACTAACGATGTAGTAATCAATAGTAAAAATTGTTTACTAGACGTATTAAAGTCGGAAGAAAATTTTGGGCACCCTGGGATTCTCTGTCGTTTGTGCGGAAAACTTGCCGTTAATCCTATACACTTGTACGCTGTAGAAACAGAAAATATTAACGTGCAGGAATTCAGTCTCGCGGATAAAATTAATCTGTGCCTTCCCGTTACGATCACGATTACGGATCCGTTGCCAAAACAGATATGCCAAGATTGTGACATGAAATTAAACGTTTGTCACGATCTCGTGGTATCGTCTTTACAAGCGGAGGACAAACTGAAAAGTTTGTTGCGTAAGAAAAAATTCCGTGTGGACGTGAATGGCGATTATTGCCCTTTGTGCGTCGAGGGTGGCATGAGGATGGTTAAACAAAGTGGTATATATCGAAAAGAAGATTTGAAGAATAATTTGAGGCTGCTGCAGTCGCcgataaatgagaaaaaaataatatcgagcaGAACGAATAATGGTGAAATTGAAATTAGATCCTGGAAGACGAAAGTAGAGTTACCCATATCATCGGGTAATTTAATAGCCGGATCTACGAATACCAAGCTGGATACTGCGCTCCAGTCTGAGATTCCTCAAGATAATATTATATTTTCACAATCAACCGGTCAAGCAAATTGTTCCGTATGTTGCTCAAAAATCGACGGTTGTACGGGGGGGAGCATTGAGAGTCGCAATTGTCGAGTTGATAATCGAATCTCATCGCGCAGTCGTGTTGTTTGTAAGTCAAGAGTAGCaccggcggcggcggcggcagtAGATTTCACGAATATCCAAGAGCTCCGACTCTATGACAGTCGTCATGGTCTCGCTACAATCATCGGAGAAACCTCTTCGTCGTCGAATAACTCGACTGGGATTCGTTGCGATACTTGCGGTCAAACATTAGCGAGCAAAGAAATTTTACGAAATCACAATTGTTCGGGAGTCGAATCAAATAAGTTTGCAATGAGCAATAGAGGAAAGTATCtcagaaaaaacaaattgaGAAATAGCGACATAATGAATATAGCGAGTAACGAGGAGGCGCCTGCAGCGAAGGGCGAGGgagaggaaagagagagggaaaaagtgGGTTACTCGTGCAAGTTTTGCAACAAGGGATTTACACAAAAGACGAGTCTCGAAAATCATACGAGGTCGTTGCATAACGATTTGTTGAAAGAGctaccgccgccgccgccgctgcTCCTGCAAGTTCCAAAGTGTTGTTACAAGTGTAAAGTTTGTTGCGAGGCATTCGCGGGAGAAAAAGATGCCGAAGCTCATGCAAGAGCGAAACATCTTTCGTCCTCGTACTTTAACAAAGAGAAGGAGGAGGACGAGGTGAATATTTGTTGCGGACAGAGTGAACAATTACCAATTGAGCAATTGATCGTAACGCGTCTGTACGTATGCGAATATTGTGAGCTTAGGTTTACAGTGCCGAGCTCTGTTCACGAGCATCGACGGATGCAGCATTCCTCCAAGAACAGGCGCAATAAGTACAGTTGCACAATGTGCGATCTAACTTTTGATTCGCATCGAGAATTAGGGACGCACAAAACTCAGCATTCACATCGTGAACCACTGGAGGATAATGTTGGAATAAAGCAATTGTACGTTTGTAAATATTGCGACAAAAGTTTTTTACACCATACGAGTCACACGAGCCACGTACTGCGACACGCTCGGACGGACTCTCGGGGGCCCTATCTCTGCCGCGTGTGCAATCTTAATTTTGTCAATTATCCGGATATTTCAAGGCATCGGGACGAGACGCATCCTTATTATCAATCGATTCTCCATGAGAGATCAAGTTTCGTCTACAATTGTCAATATTGTCGTAAAGAATTTGGCCAAGAGGTTGCCTTGATGAAACACATAAGAATGCATACCGGTGAGCGTCCATACAAATGCACCATTTGTGCCAAAGGATTCTCTCAGAGTTCCGGACTTTATACCCATCTGAGAGTTCATTCCAATGTTAGACCTTTCGCTTGTACCAAATGTTCCCGTACATTCAAGATTAAGGGTGATTGCGACAATCACATGAAAAAACACGCTGGTAATCGTCCTTACAAGTGCGAATTTTGCAACAAAGCATTTATGACTCAGCACGTTTATAGTCAACATTGCAAAATTCATACCAATGAAAGACCTTACAAGTGTCATCTGTGCGGACAAGCTTTTCGCAGGTCCCACGTACTTACCGTTCACATGAGACGGCACTCCGGTGAAAAACCTCATGTTTGCGATATGTGTCCAAAAACTTATCGTCAACGCGGTGATCTTTCCAAGCATCGAAAAGTACAACATGGTATAAGCGGCGGCGGTGGTAGTGGTGCGGGTGTTACTAACATTACCAAATTTAGTCATACCTTGCAATCTTGTGGTGATGATCAGCAGCCGCAGCATGATCCTAACTCGGATCATTTTCCAATAACGAATAAACTTTATGCCGCCGTGGATATTTGCTGCGGTGATAGTGctgatgataattttatgttgtcACTTTGA
- Protein Sequence
- MFTLILETQEGHQIELNVQPEDTFKDLKSQFVHGELVGLSDSLQQLITGGVSVLENTKIFDFVAGNAQEWLGTSALAEEPTFFQSSPKDDRSQERHPRGSVNNRTTMPEQPPFPLPADCNRLSVLPTEIERLDPYNKVFSSDMGARQSFFLCSNHYGQESLILLTDGSSTQQAPTFTSQKLKNHRSKSYPTEDIILTKDAPEEENEKEKSNVTNDVVINSKNCLLDVLKSEENFGHPGILCRLCGKLAVNPIHLYAVETENINVQEFSLADKINLCLPVTITITDPLPKQICQDCDMKLNVCHDLVVSSLQAEDKLKSLLRKKKFRVDVNGDYCPLCVEGGMRMVKQSGIYRKEDLKNNLRLLQSPINEKKIISSRTNNGEIEIRSWKTKVELPISSGNLIAGSTNTKLDTALQSEIPQDNIIFSQSTGQANCSVCCSKIDGCTGGSIESRNCRVDNRISSRSRVVCKSRVAPAAAAAVDFTNIQELRLYDSRHGLATIIGETSSSSNNSTGIRCDTCGQTLASKEILRNHNCSGVESNKFAMSNRGKYLRKNKLRNSDIMNIASNEEAPAAKGEGEEREREKVGYSCKFCNKGFTQKTSLENHTRSLHNDLLKELPPPPPLLLQVPKCCYKCKVCCEAFAGEKDAEAHARAKHLSSSYFNKEKEEDEVNICCGQSEQLPIEQLIVTRLYVCEYCELRFTVPSSVHEHRRMQHSSKNRRNKYSCTMCDLTFDSHRELGTHKTQHSHREPLEDNVGIKQLYVCKYCDKSFLHHTSHTSHVLRHARTDSRGPYLCRVCNLNFVNYPDISRHRDETHPYYQSILHERSSFVYNCQYCRKEFGQEVALMKHIRMHTGERPYKCTICAKGFSQSSGLYTHLRVHSNVRPFACTKCSRTFKIKGDCDNHMKKHAGNRPYKCEFCNKAFMTQHVYSQHCKIHTNERPYKCHLCGQAFRRSHVLTVHMRRHSGEKPHVCDMCPKTYRQRGDLSKHRKVQHGISGGGGSGAGVTNITKFSHTLQSCGDDQQPQHDPNSDHFPITNKLYAAVDICCGDSADDNFMLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -