Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: Clamp
Assembly: GCA_963989365.1
Location: OZ022415.1:46324293-46330489[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.2e-05 0.0046 18.1 2.7 1 23 173 195 173 195 0.98

2 8 0.00015 0.021 16.0 0.4 1 23 226 249 226 249 0.93

3 8 7.7e-05 0.011 16.9 2.6 1 23 348 370 348 370 0.97

4 8 1e-05 0.0015 19.7 0.1 1 23 376 398 376 398 0.98

5 8 1.9e-06 0.00026 22.0 1.7 1 23 404 426 404 426 0.98

6 8 3.9e-07 5.6e-05 24.1 1.9 1 23 432 454 432 454 0.99

7 8 1.5e-05 0.0021 19.2 1.5 1 23 460 482 460 482 0.98

8 8 3.9e-05 0.0056 17.8 0.6 1 23 488 510 488 510 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.2e-05	0.0046	18.1	2.7	1	23	173	195	173	195	0.98
2	8	0.00015	0.021	16.0	0.4	1	23	226	249	226	249	0.93
3	8	7.7e-05	0.011	16.9	2.6	1	23	348	370	348	370	0.97
4	8	1e-05	0.0015	19.7	0.1	1	23	376	398	376	398	0.98
5	8	1.9e-06	0.00026	22.0	1.7	1	23	404	426	404	426	0.98
6	8	3.9e-07	5.6e-05	24.1	1.9	1	23	432	454	432	454	0.99
7	8	1.5e-05	0.0021	19.2	1.5	1	23	460	482	460	482	0.98
8	8	3.9e-05	0.0056	17.8	0.6	1	23	488	510	488	510	0.97

Sequence Information

Coding Sequence: ATGGCCCTTGAATCAAACGGTAACAACGTCGTGTGGTTGAACGCGACCCGTCCTGATCAAATACAGCAGAGCCAACATATTCAACAGCCTGTCAAGTGTTCTATGTTCACACAGACTGAGCCTACTAATAGTTTTGCTCATAACGATCATAGTAATTCCAGTTACGCAGATCAACGACAGACACAGCAACAAGCAACGATGTTCGATCCGCAGCAAatacagcagcagcagcagcagcagcagcaggctGCGCAGAGTCAACAATCGCAGCAACAACAGTCTCAGATGTATGTTACGGCGGACAAGAAAGAGGACAAGTCGCAGCAGCAGACCACCGCGGCTGAGTTCCCATACTTCTACAACGTCAACATGCTGCAGAAAGTTCAAACAAATGCGGTGAGCACAATCGGTGCGATCACTACTGACGACAAGGGCTGCTACCGTTTCGATGTGCAACCTGTCGGTTATAACGCATTACTGAACCAGATGAGCATAGCGGCTGCTACGAGCGCGACCTTCAAGTGCGACATTTGCGGCCTGGTTTTTGGTCACATGAGCCTCCTCAATCATCATAAAAGGCTTCACAATACGACACCCAGCAATCTGCAACAACCCCAGCAGGTTGTTGCACAAACACCTACCACTGTTACTGTCGCTACCACACCCGAACGACCTTACACCTGCGACATTTGCGGGGCGTGCTTCGCTCTACCTGGCGAACTTAAGAGTCACAAAACAAATATGCATCAAAAGCCTAAAGTTCAACTCTGTGAGGATTGTGGCAGTGAAGATCCCTGCGAGCATCATCCGACCAAAGTTAAAAAGACAATCAAACCCGGTCATCATCCTGTAAAACGAAGGGGAGTTACGAGCGTTACCAAGTGCCACAAATGTAACGGGACCGGAATCATTTTTATTGGTAAAGACGACGAAAAACTAGATTCTGGAATCAGTTCCCTTGCGAAGTGTACCGGCTGCAAGGCGACAGGCCGTATCATCATAGGAAGCGGGAAGCAAAATCAGAACCAGCCGGAGAAGCCGTTTCATTGTAACGTTTGCGACGGCACTTTTTCACGATACTCGTCGCTCTGGTCCCACAAGAGACTTCACTCTGGGGATAAACCATTCAAGTGCGAAGTCTGTGGTTTGGCCTTTGCGAAGGCGGCCTATTTGAAAAATCACGGACGTGTACATACCGGTGAAAAACCGTTCAAGTGCAGCGTTTGCGGTATGCAATTCTCTCAAAGTCCCCATCTGAAGAATCACGAAAGAATTCACTCGGGCGAACGTCCCTATCAATGCGAAGTTTGCGAAAAAACTTTTGCGAGACACTCAACCCTCTGGAATCATCGAAGAATTCACACCGGCGAAAAACCCTATCGGTGTAACACGTGCGGTTCCGCGTTTAATCAAGCGACGCATTTGAAAAATCACGCCAAGGTCCATACCGGCGAAAAACCTCACAGATGTGACATTTGCGAGATAGGATTTTCGGATCGTTTCGCGCTGAAGCGTCATCGGGccatacacgaaaaatacggtcAAACGGCACGGAATCAAAACGCGAATAGCGCGTCGAACGCGCAACAGGCGAACACGAGTaatcagcagcagcagcagcagcaacaacagcagcacgatcagcagcagcaacagtCGCAACAACCGCAACAGGGACAACAAGTGGTGGTGGTGAATGCAACGACGCCTGTGACGGTTAGTCAAGGACAAGGGCAGGGAGTAATGCTTGATGAGGTTTACAAATGTCAAGTGGCCTTCCCCGAGCCAAAATGA
Protein Sequence: MALESNGNNVVWLNATRPDQIQQSQHIQQPVKCSMFTQTEPTNSFAHNDHSNSSYADQRQTQQQATMFDPQQIQQQQQQQQQAAQSQQSQQQQSQMYVTADKKEDKSQQQTTAAEFPYFYNVNMLQKVQTNAVSTIGAITTDDKGCYRFDVQPVGYNALLNQMSIAAATSATFKCDICGLVFGHMSLLNHHKRLHNTTPSNLQQPQQVVAQTPTTVTVATTPERPYTCDICGACFALPGELKSHKTNMHQKPKVQLCEDCGSEDPCEHHPTKVKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKDDEKLDSGISSLAKCTGCKATGRIIIGSGKQNQNQPEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNTCGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNANSASNAQQANTSNQQQQQQQQQQHDQQQQQSQQPQQGQQVVVVNATTPVTVSQGQGQGVMLDEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01514338;
90% Identity: iTF_00439721;
80% Identity: -