Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: -
Assembly: GCA_963989365.1
Location: OZ022416.1:23298186-23302418[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.8 2.5e+02 3.2 4.2 2 23 226 248 225 248 0.96

2 18 0.00073 0.1 13.9 1.3 1 23 321 343 321 343 0.98

3 18 0.0049 0.7 11.2 1.0 1 23 392 414 392 414 0.98

4 18 0.018 2.6 9.4 1.0 2 20 481 499 480 501 0.89

5 18 1 1.5e+02 3.9 1.5 1 10 513 522 513 541 0.85

6 18 2e-07 2.9e-05 25.1 0.1 1 23 621 644 621 644 0.96

7 18 0.049 7 8.1 0.5 1 23 650 673 650 673 0.92

8 18 0.22 31 6.1 0.3 2 22 682 702 682 704 0.87

9 18 0.00046 0.066 14.5 0.7 3 23 714 734 712 734 0.92

10 18 0.12 17 6.9 0.1 2 20 806 824 805 824 0.95

11 18 0.15 22 6.5 0.0 2 23 844 865 843 865 0.96

12 18 0.00025 0.035 15.3 1.1 2 23 885 906 885 906 0.98

13 18 0.032 4.6 8.7 0.3 1 23 928 951 928 951 0.93

14 18 0.67 95 4.5 0.0 2 23 1002 1024 1001 1024 0.92

15 18 0.015 2.1 9.8 0.5 2 23 1046 1068 1045 1068 0.94

16 18 0.3 43 5.6 0.2 1 23 1079 1103 1079 1103 0.96

17 18 0.074 10 7.5 0.0 1 23 1108 1131 1108 1131 0.97

18 18 0.0011 0.15 13.3 0.1 2 23 1162 1184 1162 1184 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.8	2.5e+02	3.2	4.2	2	23	226	248	225	248	0.96
2	18	0.00073	0.1	13.9	1.3	1	23	321	343	321	343	0.98
3	18	0.0049	0.7	11.2	1.0	1	23	392	414	392	414	0.98
4	18	0.018	2.6	9.4	1.0	2	20	481	499	480	501	0.89
5	18	1	1.5e+02	3.9	1.5	1	10	513	522	513	541	0.85
6	18	2e-07	2.9e-05	25.1	0.1	1	23	621	644	621	644	0.96
7	18	0.049	7	8.1	0.5	1	23	650	673	650	673	0.92
8	18	0.22	31	6.1	0.3	2	22	682	702	682	704	0.87
9	18	0.00046	0.066	14.5	0.7	3	23	714	734	712	734	0.92
10	18	0.12	17	6.9	0.1	2	20	806	824	805	824	0.95
11	18	0.15	22	6.5	0.0	2	23	844	865	843	865	0.96
12	18	0.00025	0.035	15.3	1.1	2	23	885	906	885	906	0.98
13	18	0.032	4.6	8.7	0.3	1	23	928	951	928	951	0.93
14	18	0.67	95	4.5	0.0	2	23	1002	1024	1001	1024	0.92
15	18	0.015	2.1	9.8	0.5	2	23	1046	1068	1045	1068	0.94
16	18	0.3	43	5.6	0.2	1	23	1079	1103	1079	1103	0.96
17	18	0.074	10	7.5	0.0	1	23	1108	1131	1108	1131	0.97
18	18	0.0011	0.15	13.3	0.1	2	23	1162	1184	1162	1184	0.96

Sequence Information

Coding Sequence: ATGAATGATATCGTCGATGTTCGGAATGTTGGAAACGTGTGCAGGTTGTGTCTCTCATCGAAGGAGCCAAAATCATCGGTCTTTGCCGATCAGGCGATTACGGCTGTTTCACTCGCGACGAAAATTCAAACCTGTCTTTCAATAGAGATTCTGACAAGCGACAAATTGTCGACGTCGATATGTTCCGACTGTCTGAGAAGAGTGAACAAATGGCATTCTTACAAGGAGTATTGTTTACGGTCACAGCAGAAATTGAAGCAATGTCTGGTCCAACTGTCCGAGGGTGCTGGAAATATCAAAGTGGAACCGCCCGATTACGAAGAAGTGATGGAGCTGGGGGAAACGGTGCCTGTGAGTTCGGACGAGGAGGTTGAAGATGTGCATGACATTTCCGACGAGCTCGAAAATGACGAGACAATTCGAACAGCAACGACTATAAAGAGGGAATTGATAGAAGGGGAGGAGAATCGAACAGCGGTAGCTGCAGAATCTGCACGTAATACGGAATTGTTGTTGAATCCGATGGCAGTCGCCGGTCACAGGGAGGAAAGATCGACAGAGGTAGATTCAACGGAGAAAGCAATTTCATTACATTTGACGTCGAAGAagggaacgaagaaaaaagGTCGTAGAGGGCCATTGACGCATTACCGAGGCTTGCGTCGCTACAAGCAAAGATGCGCATACTGTCAGATATATCTGCACTCGAAGCACAGTTACGCGAAGCACATGGAACGTTTTCATAGTGGAAAAGAGATGGTTTCGAAACGTTCACGAGTGAAAAAATTGGCAGATACAAAAGGAGAGGAAAGTTCATTGGCTGAGAAGAATTTGTTGATTGAGGAGGAAGGGGTCGAAACGGAAATGGAAGTGGAGGACGTGGAGGACGAATTGATAAGCTTGGAAAAGGACGCACCGCTGACGCCGGTGCAGCAAAACATAATAAGCCAATTGAAGACATTTTCGTGTTACACTTGCGGAGTTTCTTTCAGCGATCGTCGGAGCACGTTGAATCACATACGCCAGCATATGCCAGATTTGAGACCTTACACTTGTATAGCTTGTTTGACCGAATTCGCGGATCGTTCAGTTTACAAACTCCACTGTGGAGCATCTTTCCAATGCGCGATGAAAATAGCATTGGTAGTTCCCGAGCATGGTACGGAAAAGTATTTTACTTGTAACATGTGCCTCAGATCGTTGATAAACAGGAAAGAACTTTTGAGCCATTTGTCGCGACATTCAGATCGTCAATACGAACAAATGATGGGTGGACCTTTCCGTTCTCCGCCACAACTTGAACGAGCGCCTAATTTGGCAACTCCGAATTTCGGTGCTTTGCCTTCGAGCTCGAAAACACCGAAACGAAAGTCTGCGGGAATAAAACTCAATCGTAAAATGCCCGCGCCTTACAACCACGGAGATCCTGCTCACAATCATCCATGCATTCATTGCGGAATGATTTACAAACACAAGCAAAACCTGTTGCGTCATGTATTATTATGCAAAGATTTGCCTGCCGAGTGTCGGGTGTGTTACAGATGCACTAATTGCGGTATGACATTTCTTGCattcaacaaattttacaaCCACGTGTCCCAAATACACCACAAGAAAGATCATATCGTGTGTTATCGTTGCTACGCTAAAATCAAGCCACGTGATTTTGTGTCACATTATCGAGAACACTATGACGGCGGGGATGATCAATGGACCGAAGTGTCACCGAGTCGTGTTCGAGACGGAATCGTGGTCGTTTCATCACCGGGATACAGCAACGTCAACGGAGACGAGGAGGAAGGGCAAacaaatgagaggaacgatcctcgtttgtttataaaatcgGATCCGGGTGGTAATTTCGAGTGTGACACATGCGGCAAGGTATTCACGAGCGCTCCAAATTTGAAGCGTCACGTGCGAGCGGTCCACGAGGTGCATGGTCGTTTCAACTGTTTCACATGCGCGAAAACTTTCGTTCATGAGGAAGAATGGACGGAGCACGTGGAGTTGGAGCATAAACGAGCAGCCGAGAGGGTTGAAAGTTGTCCGCAGTGTTCATCGGTGTTCGAGAGTCCACAAGAGCTCATACTCCATTGTCGTGCCGTACATGGTCTCGATAGTGAGGATCATCTCGCTTGTTATATATGCGGCAAAAGGTTCGCCAGTGAAACGTCTCTCAAGATTCATCGGGGTCATCATTTTCGGGTGAATTCGAGATTGAGTATAGGAAACGGAGGAGTACGGGAGGCGGAGAAATTTCCCAgggttgaaatgaaaacgacgATAATCGGAGGAAAAAATACGAGTCCAGTTCGTAAGAGCGATCAGTCTCGAGCTGTCGGTTCGCCGAGAGCGAGAAAATCTTTTCCCAACGGAAGTCCGCTCGTTGGCCGAGTGGAACGCGGAGCGCTGCAGTGTCAGGTGTGCGACGATCGTTTCAACGACGTTACCGATCTCCGAAATCATCTGTGGGAAGTTCATTGCGCACGTAGTAAACCCGAGAAAGTTTTTATCTCGGATAAATTGCAGTGCGAATTGTGCACCAACGTTTTACCGGACGAGGAGAGTCTGGCGAGTCATTTGAAGTGGCACGAGAGTAATCCAATACTGAGCAACGGTGCAACAGCGAAACGGGAGCAAGCACCGGCGCAGTGCGATTTGTGCGGCATGTTTTACAGTTCGATCGCTAATCTCCGTAAGCATAAAAAGCGTCACAAGGCGTCACCGACCATGGGTGGGGGTACTCGTGGAAGGAAACGTTGGTCTTTCAGTGATGGTTTCGCTTGCGACGTATGTCGCAAAATATTTGCCAGTAGATCGATTATGAACAAGCACAAATCAGTGGCACATCCAACAGGAAAGAAGAGCGGCGATTCATCTAAAGCATCAACCAGTAATCGTAAAGCGCCGAATTATCTGGGTAATTTTCTGAAAACGACCATAGTGTCACCATCGAAACGGAATTCCAACGCGTTTACCGAAGACGTTAAAAAATCGATCGTTTGTAATCTTTGCGGTAAAATAATGGCGGACATACGAGTATTGGTAAAGCATCGTCAGGTGGTGCACAAAATAACGAACGATACGAATTTCGGTTTGGAGACGAATCATCTCAGTAGTAATCCTCAAGTGTCGTGTACATCTTGTCCAAAATTGTTCACCAACGTAGCGAACATGAGACAGCATTATACGAAAGTTCATGGGGCAAGCGCTGGCGATCGAGCAACGCGTTATCCTTGTTCCTTGGACGGTTGTAACTTTGCTTTCGAGACTCTAACCGCAAAGCGAATTCACGAAAAAAGTCACGCAAACGTGGTGTACACTTGCGGCCTGTGTCCCCGACAATCTCTAAGTCCCTCGTCAATGGCAGCGCACATGTTAACGGCTCACCGTACCAATCGGGTCTCGGGCAACGACAAAATGACtctttgcaaaaaaattcatatcgaCAAATACGAGGTTCGCGGAGCGAACGGAAGAAAGTGTCCCATTTGCGAAATTACTTATCCCAATTACAAAGCTCTCAAAATACATTATTTGAAGATACACGAGGACGGAGCTTAG
Protein Sequence: MNDIVDVRNVGNVCRLCLSSKEPKSSVFADQAITAVSLATKIQTCLSIEILTSDKLSTSICSDCLRRVNKWHSYKEYCLRSQQKLKQCLVQLSEGAGNIKVEPPDYEEVMELGETVPVSSDEEVEDVHDISDELENDETIRTATTIKRELIEGEENRTAVAAESARNTELLLNPMAVAGHREERSTEVDSTEKAISLHLTSKKGTKKKGRRGPLTHYRGLRRYKQRCAYCQIYLHSKHSYAKHMERFHSGKEMVSKRSRVKKLADTKGEESSLAEKNLLIEEEGVETEMEVEDVEDELISLEKDAPLTPVQQNIISQLKTFSCYTCGVSFSDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSVYKLHCGASFQCAMKIALVVPEHGTEKYFTCNMCLRSLINRKELLSHLSRHSDRQYEQMMGGPFRSPPQLERAPNLATPNFGALPSSSKTPKRKSAGIKLNRKMPAPYNHGDPAHNHPCIHCGMIYKHKQNLLRHVLLCKDLPAECRVCYRCTNCGMTFLAFNKFYNHVSQIHHKKDHIVCYRCYAKIKPRDFVSHYREHYDGGDDQWTEVSPSRVRDGIVVVSSPGYSNVNGDEEEGQTNERNDPRLFIKSDPGGNFECDTCGKVFTSAPNLKRHVRAVHEVHGRFNCFTCAKTFVHEEEWTEHVELEHKRAAERVESCPQCSSVFESPQELILHCRAVHGLDSEDHLACYICGKRFASETSLKIHRGHHFRVNSRLSIGNGGVREAEKFPRVEMKTTIIGGKNTSPVRKSDQSRAVGSPRARKSFPNGSPLVGRVERGALQCQVCDDRFNDVTDLRNHLWEVHCARSKPEKVFISDKLQCELCTNVLPDEESLASHLKWHESNPILSNGATAKREQAPAQCDLCGMFYSSIANLRKHKKRHKASPTMGGGTRGRKRWSFSDGFACDVCRKIFASRSIMNKHKSVAHPTGKKSGDSSKASTSNRKAPNYLGNFLKTTIVSPSKRNSNAFTEDVKKSIVCNLCGKIMADIRVLVKHRQVVHKITNDTNFGLETNHLSSNPQVSCTSCPKLFTNVANMRQHYTKVHGASAGDRATRYPCSLDGCNFAFETLTAKRIHEKSHANVVYTCGLCPRQSLSPSSMAAHMLTAHRTNRVSGNDKMTLCKKIHIDKYEVRGANGRKCPICEITYPNYKALKIHYLKIHEDGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00265967;
90% Identity: -
80% Identity: -