Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: prdm10
Assembly: GCA_963989365.1
Location: OZ022417.1:28331606-28337957[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.023 3.3 9.1 0.4 2 23 490 511 489 511 0.95

2 14 4.2e-08 6e-06 27.2 1.3 1 23 545 567 545 567 0.98

3 14 0.0031 0.44 11.9 4.0 1 23 575 598 575 598 0.98

4 14 0.014 1.9 9.9 0.4 2 23 616 637 615 637 0.95

5 14 2.9e-05 0.0041 18.3 1.2 2 23 650 671 649 671 0.96

6 14 0.00066 0.095 14.0 3.8 1 23 689 711 689 711 0.97

7 14 0.0066 0.94 10.8 2.1 2 23 720 741 719 741 0.96

8 14 0.0067 0.96 10.8 0.1 1 23 748 770 748 770 0.98

9 14 0.00022 0.031 15.5 1.4 1 23 777 799 777 800 0.95

10 14 0.018 2.6 9.5 2.2 1 23 805 827 805 827 0.98

11 14 0.00021 0.03 15.5 4.4 1 23 833 856 833 856 0.96

12 14 0.0017 0.25 12.7 1.7 1 23 889 912 889 912 0.97

13 14 0.00046 0.065 14.5 1.9 1 23 934 957 934 957 0.95

14 14 0.0039 0.55 11.6 3.4 3 23 995 1016 995 1016 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.023	3.3	9.1	0.4	2	23	490	511	489	511	0.95
2	14	4.2e-08	6e-06	27.2	1.3	1	23	545	567	545	567	0.98
3	14	0.0031	0.44	11.9	4.0	1	23	575	598	575	598	0.98
4	14	0.014	1.9	9.9	0.4	2	23	616	637	615	637	0.95
5	14	2.9e-05	0.0041	18.3	1.2	2	23	650	671	649	671	0.96
6	14	0.00066	0.095	14.0	3.8	1	23	689	711	689	711	0.97
7	14	0.0066	0.94	10.8	2.1	2	23	720	741	719	741	0.96
8	14	0.0067	0.96	10.8	0.1	1	23	748	770	748	770	0.98
9	14	0.00022	0.031	15.5	1.4	1	23	777	799	777	800	0.95
10	14	0.018	2.6	9.5	2.2	1	23	805	827	805	827	0.98
11	14	0.00021	0.03	15.5	4.4	1	23	833	856	833	856	0.96
12	14	0.0017	0.25	12.7	1.7	1	23	889	912	889	912	0.97
13	14	0.00046	0.065	14.5	1.9	1	23	934	957	934	957	0.95
14	14	0.0039	0.55	11.6	3.4	3	23	995	1016	995	1016	0.98

Sequence Information

Coding Sequence: ATGGATTCGAGGGGCCCTCCCGAGGGGGGCCCTGTCGATTCAATCGAGATGTCGATTTTGGACAGCAAAACATCAGAAATTTCGGAAAATTGGCCAACGAACAATATTCTCTCATCGACACTTGGCGATCCTTCGAGAAAATCCAACAACAGGCTTTTGTTTTTAACTgTGGGATATCTTGAGGACCAATCACGCGATTACTCAAGAATGTTTCCCGCGTACGAGCAGGTTCCATTTTTCCCACGTGCAGCTTCGCCGCTCTCAGATTTTGAGCACCGTGTCAGTCCTCTGGATCCGAACATGAGTTCGGCGGCTCGTTATTCACCGACACCGGTTCCTCTGCCACCTCTGCCGTTTCACAATTCAGTAGTGGTTCTTCAAGGCCCGCCGTCTCCTCTCGTTATTCAACCCGAGAGCGAAACAAACACCCCTGCTGCTATCAATTTTACGGCGGATCAAACCAGAGCCGAAACCACCGAACGACGTCACGTCGTCAATGATTTTGTCACCGCCGCTCACGAGGAGGAATTGGTCGCCGGCGTCGGCGAAGAATTGATTTTAATGCAAGGAACAACATCGGAATTGGAAGCTTCAGCGGCACCTTTGATGCTGGCAGGGATCCCTGACACGGAATTTGCTTTGACGAGAGATTTCCTGGTGATGCAGGACGATCAAATAAACGTGATGAGTACACTGAGAAATCAGGATATAAATGAAGAGCCAACGGTCGTTGTGGTGGCAGAGCCGATAAACCCTGAGAACGAAACTGACATAAATTTGACAGTTTCTTCGATGATCGAAAACATTGGAACGGTGGAAGAAACGAATAAAGAAGTTAAGAAGATCGAGGAACCGGACAAAAGAATCGTTAGACGTTCGAGACGTcaaataaacgataaaaaaacattctccTGTGAACAATGTGATTCCGTTTGTCACAAAATTGGCGAATGCACGATTAACAACGTACGCACCATCGCCGATCAACCCGTACCTTCCAGGGCCATCGCTACACTCCCGGGCTCTTATTTGTCCATCAATAAATTATCAGCATCAAATAATTTATCCGGAAATTCGAATTTTGGAGTTTTTGCTAAAAGAAATATTCGCTCGCGAACACAATTCGGACCCATCGAAGGGATTCTTTGCCCTTACGATGGCACACCTTTCCAAAATTCCTTACCACTCCTCTACGAAACTgaaaatggagaatttttcaaaatcgacGTTTCGAACGAAAatgctTCAAATTGGATGCGATTTGTCAGACCAGCCACCACGTACAAAGAACAAAATCTCGGAATTTGCCAACAGGCCGATGGAATCGTATTCTTAACAACCAGAAATATTCTGCCAAAAGAGGAATTGAGAGCTGGGCCTAATCCCGAATACGCTGTTCGCAGAAATTTAAAGGTTCTCGAACCCGAAATGAAACACGATAAAGAATTGACCGACTCGACTTCGTGGCCGTGTTTCGAATGCAATCAACGTTTCTTAACATTGGCCAAGCTTCAGAAACACTTGACGATCCATGAGAACCCAAAAGTCGAGACAAAATCGAGAATTAAGCGTAGAAAAATGACTGTACCGACAAAGAAACTCTTCAAAGTGGTGGACGGTGAAAATTCGTTGTACACGTGTCCGCACTGTCCGAAGGTATTTCCGCGGAGTTACAGTCTGAAAAGACATTTGTTGATTCATCCAGGAGCGAAAGCGCCTCGTTACGAGTGCAACACGTGCGGTGAAAATTTTTTGCATCCCCACAATCGAAATCGTCACATGAAAATATTTCACggtgatggaacgaaggaaaagGAGAATTCTCGTCAAAATTCGACCGAGTGGAAATGCGCCACGTGCAATTTAATTTTCAGCAAAtcgaatttattgaatttgcaCAGTTTGTCCCACACGAGCGACCTTTTCTCGGACCAAAAACTCGACGATTCTTGTCCACAGTGCAACGAGACTTTCAAAACTCGCCATGATCTTATCCAACACGTGGCCAAACATGCCCGACGATTACAATTaccaaaatcaaataaaattacacCTCTCGCCTCACATAAATGCAACATGTGCTACAAACGCTTCGCCACCAAAGTGCGATTACAACAGCATTATTTGGTGCACGGTGCCGAGGACCAAAAACCACTGCCATGCGACATTTGTTTTAAACGTTTTATGAACAACTCGGCCCTGTCCTGCCACTTGAAAACTCACAGagAGGACAAACAAATATTCGAATGCCCGATGTGCCGCGAACTATTCAATCAAGTTTTAATGCTCAAAGACCATATCGAAACACATCGAAACGAGGACGAGACGTTTAGCTGTCCCCAATGTCCAAGGACCTTTGTAAAATATTCGGTTATTCGTAAACACATAAGAGCTCATCATTCCGAACGTAAACACAAGTGTCAATTTTGCGCCATGCGTTTTCCCACCGTTGATAAATTGCGAATGCATTTGCTGCGTCATTCTGATCACAGAGAATTTCATTGTGCGAATTGCGAGAAACAATTCAAACGAAAGGACAAACTCAAAGAGCACATGACGAGAATGCACGATTCTCAGAGAACAAAACGTGATCAAACGGCCCAAAATAatcagatgaaaaaaattgtaccgaaggtgattccaACGGATTACAATCGATTCGTTTACAAATGTCATCAATGCCTGGTCGGTTTTAAAAGACGAGGAATGCTCGTTAATCATTTGGCAAAACGGCATCCCGATGTTTCGCCCGAATCGGTACCCGAATTGAATTTACCGATATTGCGACAGACCCGGGATTATTACTGCCAATATTGCGAGAAAGTTTACAAAAGCAGTAGCAAGAGAAAAGCGCACATCGTGAAAAATCATCCAGGAGCAGCGTTGCCCCCGAGCAATCGTTACAAAGAAACAGATTCTGGGGGTTTGCCGAATCTGAGTTTCAGTCAAACAGTTGGAAGCGTAACAACAAGGCCGCAGGGTTGTCAATGGTGTCACAAACAATACGCGAGCAAAGCGAAGCTTTTGCAGCATCAGCGTAAAAAGCATTCGAGTTTGATGGAACCAGCGGACAAAGTGCCGCGTGCACGAAATCGACCGCCGCGTGAGCATCGTACACAATCGTCGAATATCGTCGAGGCGAATTTTCTCATGAGCGATTATTTGCAGAGCTGTGAAATCGAGGCAGATTTTTTGAAgcctaaaatgatgaaaatatcgGCTACGGAGGTCGATCTCATTGGCACCGGGCTTGAATTGACGGGCCAACAGCAATTTGTTCGCATGCGTGATATACGCTGA
Protein Sequence: MDSRGPPEGGPVDSIEMSILDSKTSEISENWPTNNILSSTLGDPSRKSNNRLLFLTVGYLEDQSRDYSRMFPAYEQVPFFPRAASPLSDFEHRVSPLDPNMSSAARYSPTPVPLPPLPFHNSVVVLQGPPSPLVIQPESETNTPAAINFTADQTRAETTERRHVVNDFVTAAHEEELVAGVGEELILMQGTTSELEASAAPLMLAGIPDTEFALTRDFLVMQDDQINVMSTLRNQDINEEPTVVVVAEPINPENETDINLTVSSMIENIGTVEETNKEVKKIEEPDKRIVRRSRRQINDKKTFSCEQCDSVCHKIGECTINNVRTIADQPVPSRAIATLPGSYLSINKLSASNNLSGNSNFGVFAKRNIRSRTQFGPIEGILCPYDGTPFQNSLPLLYETENGEFFKIDVSNENASNWMRFVRPATTYKEQNLGICQQADGIVFLTTRNILPKEELRAGPNPEYAVRRNLKVLEPEMKHDKELTDSTSWPCFECNQRFLTLAKLQKHLTIHENPKVETKSRIKRRKMTVPTKKLFKVVDGENSLYTCPHCPKVFPRSYSLKRHLLIHPGAKAPRYECNTCGENFLHPHNRNRHMKIFHGDGTKEKENSRQNSTEWKCATCNLIFSKSNLLNLHSLSHTSDLFSDQKLDDSCPQCNETFKTRHDLIQHVAKHARRLQLPKSNKITPLASHKCNMCYKRFATKVRLQQHYLVHGAEDQKPLPCDICFKRFMNNSALSCHLKTHREDKQIFECPMCRELFNQVLMLKDHIETHRNEDETFSCPQCPRTFVKYSVIRKHIRAHHSERKHKCQFCAMRFPTVDKLRMHLLRHSDHREFHCANCEKQFKRKDKLKEHMTRMHDSQRTKRDQTAQNNQMKKIVPKVIPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVSPESVPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIVKNHPGAALPPSNRYKETDSGGLPNLSFSQTVGSVTTRPQGCQWCHKQYASKAKLLQHQRKKHSSLMEPADKVPRARNRPPREHRTQSSNIVEANFLMSDYLQSCEIEADFLKPKMMKISATEVDLIGTGLELTGQQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057116;
90% Identity: iTF_00266664;
80% Identity: -