Rmeg011762.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- -
- Assembly
- GCA_963989365.1
- Location
- OZ022416.1:25949528-25951171[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.001 0.15 13.4 0.5 1 23 70 92 70 92 0.98 2 12 0.0058 0.82 11.0 2.9 1 23 138 161 138 161 0.93 3 12 0.035 5 8.5 3.1 3 23 200 221 198 221 0.96 4 12 0.072 10 7.6 2.5 1 23 262 285 262 285 0.97 5 12 0.011 1.5 10.2 4.9 1 23 294 317 294 317 0.97 6 12 0.041 5.9 8.3 0.9 3 23 333 354 331 354 0.95 7 12 1.3e-05 0.0019 19.3 1.4 1 23 360 383 360 383 0.96 8 12 0.011 1.5 10.2 0.8 3 23 390 411 388 411 0.93 9 12 0.00046 0.065 14.5 0.6 1 23 416 439 416 439 0.97 10 12 1.9e-08 2.7e-06 28.3 0.4 2 23 446 467 445 467 0.97 11 12 7.4e-07 0.00011 23.3 0.8 1 23 473 495 473 495 0.98 12 12 6e-07 8.5e-05 23.6 0.1 1 23 501 523 501 523 0.98
Sequence Information
- Coding Sequence
- ATGGATGAGCACGAGAACGATTTCGAGAAAATCAAAGTTGGTGACGTTCTTCCGAACCAGAATCCTAAGAACAATATTAAAGTTTTGGAAACTTCGATAAAGGTGCAAACTGTCGAAGAAATGGCGTACGTTAACGATTCGATGAATAGTAAGAAAAGTACACCTGGAAAAAAGTTGGATCGCACATACGAGAACCAAATCAGTTGGTACAACTGCGACAAATGCGCTATTAAATTTCCTCTCGAAAGTATGCTGAATCGGCACAGAATGAGCCATGGGTATGGCattacaacaacaaaaataaagaaaacattccCATCGAATCATACAAAGCTACAAGATATTGATAATAATGAGGAAGCGCAAACAACGCGTTCGAAAATGATGGAAATACGAGACACCACGAGATTACACATatgtaatttttgtgattttgtaTGCGACAGTCGCTCGACACTAACGTCACATTTGGCAAATGATCACGACATTATAATAATTCCGGAGGTGACGAGGATCAAATACCAAGTATGCAACGCTGAGGCAAATCCGATAGTTGAATCGCGAGAAAACGTAGCAAACAAAGAGGAAACATTTGGTTGCGATTTGTGCAATTTCATATGCAAAAAACGCAGCACCTTGACGGCACACGAGAACAAGAAACATCCACGCGAGACGATCAATATCGATACCGCCAATATAAAGGTGGAATACGATTGCAAAGAATTGTATTTATCGAGTAGCCAGATGGAACAACAAAAAGAACAAGCACAAACTCATACTGTATACAGTTGCAACAGTTGCAGCTTCGAATCGGCGAACAAACGTACGCTAAGTTCGCACAAACGTCGACAACACACGATAAAACCGAAAGACGAGATATACTTTTGCAACGAATGCAACTTCAAGACCAAGAAAAAGACAACTCTGTATTCTCACATCAAGAGGAAACACGAATCGTTAAATAACACTCCAAAGGAGAGACCCGAGCTGTTTGGCTGCAATCAGTGCGATTACAAGAATAAAAACAAGTACGAGCTCAAAGTACACGTTGCAAGAAAGCACACCGACGACTTTAAATTCACGTGCGACGTATGCACGAAAAAATTCAAGGTCAAGGGTGATTTGACGAATCACGTGAGGTTCAGCCATCGCGAGCAACCGATCATTTGTGACGTTTGTGGTAAAACTTGTCTCAACAGTAATTCTCTCTACGTCCATCAAAAGTTCGCTCATTACAAGGCGAAATACGAGTGTCGCGTGTGCAAACGACGTATGGTCAGTCAGGAAAATCTCAACGAGCACATGCTGCGACAACACGAGAAACGCGAGAACGTCGTTTGCGAAGAATGCGGCAAAACGTTTTCCCGCAATTCGCGCCTTAAAATTCACATGAGGATACACACCGGTGACAGACCGTACAATTGTCAAATTTGCAATAAAACCTTTGCACGAAGAACCGCACTTAAACAACATTTGCTCATACATACAGGCATGAGGCCTTATGTCTGTGATGTTTGTGGCAAAGCCTTCACTCAAAAACCCGGACTCATTAGTCATCGAAAATCTCATCCGGGACCACTTCCACCGTTGCCGCGAGTTCGCATCGATCATATACTCAATGATGCGCTCGGACCCGATTCCTGA
- Protein Sequence
- MDEHENDFEKIKVGDVLPNQNPKNNIKVLETSIKVQTVEEMAYVNDSMNSKKSTPGKKLDRTYENQISWYNCDKCAIKFPLESMLNRHRMSHGYGITTTKIKKTFPSNHTKLQDIDNNEEAQTTRSKMMEIRDTTRLHICNFCDFVCDSRSTLTSHLANDHDIIIIPEVTRIKYQVCNAEANPIVESRENVANKEETFGCDLCNFICKKRSTLTAHENKKHPRETINIDTANIKVEYDCKELYLSSSQMEQQKEQAQTHTVYSCNSCSFESANKRTLSSHKRRQHTIKPKDEIYFCNECNFKTKKKTTLYSHIKRKHESLNNTPKERPELFGCNQCDYKNKNKYELKVHVARKHTDDFKFTCDVCTKKFKVKGDLTNHVRFSHREQPIICDVCGKTCLNSNSLYVHQKFAHYKAKYECRVCKRRMVSQENLNEHMLRQHEKRENVVCEECGKTFSRNSRLKIHMRIHTGDRPYNCQICNKTFARRTALKQHLLIHTGMRPYVCDVCGKAFTQKPGLISHRKSHPGPLPPLPRVRIDHILNDALGPDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299505;
- 90% Identity
- iTF_01299505;
- 80% Identity
- -