Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: -
Assembly: GCA_963989365.1
Location: OZ022420.1:29319519-29325142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0018 0.26 12.6 0.8 1 23 317 339 317 339 0.96

2 11 0.00046 0.065 14.5 0.3 1 23 347 370 347 370 0.97

3 11 8.3e-05 0.012 16.8 3.4 1 23 405 427 405 427 0.98

4 11 5.7e-07 8.2e-05 23.6 1.5 2 23 465 486 464 486 0.97

5 11 0.0026 0.37 12.1 3.5 1 23 491 514 491 514 0.96

6 11 1.5e-06 0.00021 22.3 0.8 1 23 554 576 554 576 0.98

7 11 7.9e-07 0.00011 23.2 0.9 1 23 586 608 586 608 0.96

8 11 2.2e-06 0.00032 21.8 1.2 1 23 614 636 614 636 0.99

9 11 1.1e-05 0.0016 19.5 0.2 1 23 642 664 642 664 0.98

10 11 0.002 0.28 12.5 4.2 1 23 670 692 670 692 0.98

11 11 0.00042 0.06 14.6 0.3 1 21 698 718 698 719 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0018	0.26	12.6	0.8	1	23	317	339	317	339	0.96
2	11	0.00046	0.065	14.5	0.3	1	23	347	370	347	370	0.97
3	11	8.3e-05	0.012	16.8	3.4	1	23	405	427	405	427	0.98
4	11	5.7e-07	8.2e-05	23.6	1.5	2	23	465	486	464	486	0.97
5	11	0.0026	0.37	12.1	3.5	1	23	491	514	491	514	0.96
6	11	1.5e-06	0.00021	22.3	0.8	1	23	554	576	554	576	0.98
7	11	7.9e-07	0.00011	23.2	0.9	1	23	586	608	586	608	0.96
8	11	2.2e-06	0.00032	21.8	1.2	1	23	614	636	614	636	0.99
9	11	1.1e-05	0.0016	19.5	0.2	1	23	642	664	642	664	0.98
10	11	0.002	0.28	12.5	4.2	1	23	670	692	670	692	0.98
11	11	0.00042	0.06	14.6	0.3	1	21	698	718	698	719	0.94

Sequence Information

Coding Sequence: ATGAATATTACAAATGATGATAAGGCGGTAAGAAATTCCGTCGTCGATTTGCAAGTATTGATCAACGAGTGTCGCAtttgtttcgaaaaatgcaacCAAGTTTGGCAAATATTTCATCCCACCAACGAGGAGATACCAAGGAAAATAATGGAATTCGCTGCTGTACAGGTGGAAGAGGGGGACGGATTGCCAGCGACAATTTGTTATAATTGTCGTAGACTTTTGGACGTATCGTACAGCTTCAAGCGGCAGGTAGAACAGTCGGACGCGAAATTTCGCAAATTTTTGATGTTGAAAGAGACGAGCGAGGAGGAGAACGAGAAGATATTGTCGTTGTCGCATTCGGTGAATGCGGCGATAGCGGAGGCAATAGCGGACGAAATAGCTCAAGaacgaggaggaggaggaggaggagagaaCACAACGACGGGGGTGGAGGGATGTACGGAGCTTGTGGAAACACTGGGGGAGCCCGGGAGTCATGGAATGGTACACGAGTTGGAAGAACATCATTACGTATCGCACGACGAACCGATTATTTTTCGAATCGAACCACCTCCCGATCACGAATGCGTCCTGGCGGAATCGTTGACGGATATGCGGAACGCAGTTTGCGAAGGAATCGGTGAGAAGAGCATGGAATTGAACGATTGCAGTGGAGAGAACGGAGGAACAACAGTGAATGTTCTAATAGAAAAATACGACGAGCTGGTGGATTCGAGTTTGAACGGAGAAGCTTACAAATCGGAATCAATAATGATGACCGAATCGTCCGAGGAAGACGAGCGTAATTTTCAAGAAGCCAAAAGCCTTGGGGAAAACGATCCGAAGAATGAGAACTTGGAGGAAAATTTGATGAACGATATGAATGGCAGAGAGCAGATTTCTAAAGAACGATTCGAAAGCGAGGATAAAGAAAAATCTCTTGGGAGTACCAGAACGCAAAGGTTCAAATGCCCCAATTGTATTAAAACATTCGGTACGAAAACCTCGCTTGATAGACACTCCGAAATACACAAGAAAAAAACTAATCCTCGCTATGCTTGCACAATGTGCGAAAAACAATTTGGAAATGTTGCCAAATTGAAGAACCACTTGATAACAAATCATGAAAGCCTCGGTAGCGATGAGAAGATTCGTGATGACCTTAATGAGGATGAGGCAAGAACGGAGAAACAAATTGGTGGACCGGAGAGCAAAAAAAGCATGAAATTCAGCTGCAACATTTGCAGTAAACAATTTACTTATCAAAAATCCTTTATGACTCATGCAAAAACTCATCCGGGCTACGAACCTGAAACAATATTtgagaaagatgaaaataatgTTTGGGAGGAATCCAACGAGCGTGGCCACGAATCCGAGGATGATGATCTACCCCTGGAAGGCTTGCAATGCACGCAGTGCGGCAAATTATTCGCCACGAAAAGAAATCTCAAGCGACACATATCTACTCACAGCGGCTTAAAGTTCCATTGTTCCACTTGTAGCAAAGAATTCTCCAGGATTGACAAACTCAAGGAGCATGAACAATCTAAACACAAGGAAGAATTTTTTGCCTCGTCGGATTTTGATTCTGACGACGATACCGACAATGAGAATAAACACGACGATGGAAATgagaatagaaataataaaaagGAGAAGCACAACCGACCTCATCGGTGTCCGATGTGTCCGAAGGCGTTCGCTCAAGAGCAATCTTTGAGGAATCACATGGAGCGTCATAAGCGAGTGAAAGATACGCAAAAGCGTTTTTTGTGTGAGGTGTGCAGCAAATGTTTTGCGCAGAGTGGCTCATTGGTGGCTCACATGCGAACGCATACGGGGGTGAAGCCTTACGTGTGCAACGTGTGTAGCAGAGCATTCACCAAGAGCACGTATCTTCAATTGCATTTGAGAACTCATAGCGGAGAAAAGCCTTATATATGTCAATACTGCAGTCGAGCGTTTGCACGAGCTAATACATTGGCAAGACACATAACAATGCACACAGGAGAGGCAAAATATCATTGTCAAATTTGTATGAAATCTTTTCGCCGCTTGACATCTTTGAACGAACACACTTATACTCATACAGGGCAAAGACCTTACGCCTGTAAAATATGCACAAAAAGATACAACAACGCTGGTTCTCTCTATGCTCACACCAAAAAATGCAAAGCTCAACAATCTTCAGGAACAACGACGGACTTTGTTCTCCCGGTTGACGAAGAAATTCATCGGAACGGCGCCCAATCCCAAATGATGATTTACCCTCAGAGAAAATCCTCCGAACCACCGCCCGTCGAACATATCCAACCCACCTCACAATTCATTATCTCAAACGTTCACAATCCTTCGCTCAAAGCCCTCCCCAATAATATTATGCCTCAATTCACCGTCCAAGACCCCAATTTCTGTAACGTCAATTCCAAGTCTTTCAAAAATCCTTATTACACCATTTATCCGAACATGTAA
Protein Sequence: MNITNDDKAVRNSVVDLQVLINECRICFEKCNQVWQIFHPTNEEIPRKIMEFAAVQVEEGDGLPATICYNCRRLLDVSYSFKRQVEQSDAKFRKFLMLKETSEEENEKILSLSHSVNAAIAEAIADEIAQERGGGGGGENTTTGVEGCTELVETLGEPGSHGMVHELEEHHYVSHDEPIIFRIEPPPDHECVLAESLTDMRNAVCEGIGEKSMELNDCSGENGGTTVNVLIEKYDELVDSSLNGEAYKSESIMMTESSEEDERNFQEAKSLGENDPKNENLEENLMNDMNGREQISKERFESEDKEKSLGSTRTQRFKCPNCIKTFGTKTSLDRHSEIHKKKTNPRYACTMCEKQFGNVAKLKNHLITNHESLGSDEKIRDDLNEDEARTEKQIGGPESKKSMKFSCNICSKQFTYQKSFMTHAKTHPGYEPETIFEKDENNVWEESNERGHESEDDDLPLEGLQCTQCGKLFATKRNLKRHISTHSGLKFHCSTCSKEFSRIDKLKEHEQSKHKEEFFASSDFDSDDDTDNENKHDDGNENRNNKKEKHNRPHRCPMCPKAFAQEQSLRNHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQSSGTTTDFVLPVDEEIHRNGAQSQMMIYPQRKSSEPPPVEHIQPTSQFIISNVHNPSLKALPNNIMPQFTVQDPNFCNVNSKSFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00828966;
90% Identity: -
80% Identity: -