Rmeg017344.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- -
- Assembly
- GCA_963989365.1
- Location
- OZ022418.1:30504264-30514957[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 7.7e-06 0.0011 20.1 1.0 1 23 238 260 238 260 0.98 2 31 0.0033 0.47 11.8 1.9 1 23 283 306 283 306 0.96 3 31 0.00025 0.035 15.3 0.5 2 23 313 335 312 335 0.96 4 31 0.00013 0.018 16.2 0.6 1 21 355 375 355 376 0.96 5 31 0.0023 0.33 12.3 0.2 2 23 493 514 492 514 0.96 6 31 0.13 18 6.8 0.2 1 23 520 543 520 543 0.92 7 31 0.00015 0.021 16.1 0.1 1 23 613 636 613 636 0.96 8 31 0.0099 1.4 10.3 0.4 1 23 642 665 642 665 0.96 9 31 0.15 21 6.6 1.5 1 23 678 700 678 700 0.97 10 31 3.1e-05 0.0044 18.2 0.6 3 23 745 766 743 766 0.96 11 31 0.042 6 8.3 0.7 2 23 834 857 833 857 0.93 12 31 6.9 9.8e+02 1.3 0.0 2 23 866 888 866 888 0.83 13 31 0.028 4 8.9 0.1 2 23 895 917 894 917 0.95 14 31 1.6e-05 0.0023 19.1 1.2 1 23 925 947 925 947 0.98 15 31 0.33 47 5.5 1.3 2 23 991 1014 990 1014 0.91 16 31 0.00026 0.037 15.3 3.3 1 23 1017 1040 1017 1040 0.97 17 31 0.017 2.5 9.5 0.7 2 23 1047 1069 1046 1069 0.95 18 31 0.0029 0.41 12.0 6.0 1 21 1162 1182 1162 1183 0.95 19 31 0.0033 0.47 11.8 1.8 2 23 1197 1218 1196 1219 0.93 20 31 0.16 23 6.5 1.1 1 23 1222 1245 1222 1245 0.95 21 31 0.01 1.5 10.2 0.9 2 23 1252 1275 1251 1275 0.93 22 31 3.8 5.3e+02 2.2 0.2 2 23 1283 1305 1283 1305 0.94 23 31 4.5 6.4e+02 1.9 0.0 2 23 1312 1334 1311 1334 0.87 24 31 0.14 20 6.7 3.0 2 23 1343 1365 1343 1365 0.96 25 31 2.8 3.9e+02 2.6 1.7 2 23 1371 1393 1371 1393 0.92 26 31 0.065 9.3 7.7 0.4 1 23 1467 1490 1467 1490 0.95 27 31 0.0064 0.92 10.9 2.8 1 21 1531 1551 1531 1552 0.94 28 31 0.56 79 4.8 1.4 2 23 1679 1701 1678 1701 0.94 29 31 0.13 18 6.8 0.9 2 23 1708 1730 1707 1730 0.97 30 31 0.85 1.2e+02 4.2 2.5 1 23 1741 1763 1741 1763 0.97 31 31 0.02 2.8 9.3 0.4 3 21 1775 1793 1775 1794 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCCTCCAAGGAACGCTACAACGAGCTTTGCAGGCTCTGCGCCTCTTACGACGCCGTCAAAATGGATATATTCGGTAATGAGGGAAAAAATCGTCAGCTCGTCGACAAAATACAAACTTGCCTGCCCTTCAAAATTGCTGAAGATGATCGGCTACCCAAGTGTCTGTGTTATCGATGTATGTacaatttggaaaatttttacGACTTCAGAACGGCCTGTGTTAATGCTGTTGCTCTTTTGGAAAGGTGTCTACCATCCGGAAGCAATGCGacTCGTAAACAAATCGAAAATGGGGTGGAGAGTTATTCGGAATTGCGCTCGGAACTCCTCAAGGAGAAGGAAAAGATGCCTATACTCATACCCGAAGCCCCCATAGTAAATCCAAACGCGGCCCTTGGAACGCCGCCGAGATTAAATTCGGACGGCGAGGGCGACCACGAGATCGAAGAAATTCATAACGTTAGCGGGACCGAGGatgGTGTCGCGAAAGAATCAGTATTCGCAACGAACGCAAGCTTCGAGGATACGGACGATCGTAAATCGGACGAGTACGAGATGGACATGGAGACGAATCCGAGCGATTTTTTGGAAATGACGCCGATGGTAACCGAGGAATTGGATGAAACTAGCATAAAAAAGTCACAAGCGTCTAAAACGAGAAACATGATGGAAACATTTCAACACACGTCCGAGCAACACGAGGTATATGTTTGCTCGTTGTGTAACAAGGCTTTCAGTTCAAAGGGTCACTTATCCTTGCACGCGAGAATTCACGTTGGCGCGGGTGACGTTATCGGTGCCAAAGTCGTTACGGACGATCACACCTCGTACAAGAGACCCTATCAGTGTGATCTTTGCAACAAATCCTATTCAACGGCGAAACATCGATGGGGGCATGTATCAACGACTCATCGAGGTCATCCGGCTGTAACGTGTGCCTATTGTTCGCGAATATATTCCACTCGTACGAATCTTGAAGAGCACATAAAATCTCGACACACCGGTCTACCACCGCCTCCGGAATTACCAGTTGCTTACGTACAACCGAACAATCGATACAGATGTAAAACCTGTCCAAAGATGTACACGAACGTAACGGATTTGAACAAGCATACGAGAGTATGCGCGGCTGATGCTGCCACCAAGGAAAAACAGCAGCAAcggtcgattaaaaaaataccTCGAAAGATTAAGTCTCGCGTGGATACGTCCGATATTTCGAGCAGCAGCGGTACAACTGACACCGAGGACGAGAGCAACAACGATTACAGAAACGCCGAAGCAAAACTCTCCAAGAACCCTCAATTAACAATACTGAAACAGGCCCTCACGAAGGGTGCCGAAAGTCTCAAGAGAGATTACGAGGATAGAAGAAACCAAGCGGCGGGCGCTGGTGGCGGCAACAACAAACCTCCTGCTGCTAAAGTTGCGCGGATAGAAAATAGCGAGGGTCCGGCCCGAAAGAGATGGTACTGCGAGATGTGTCCACAAAATTTCACCTCCGTTGACAAATTAAAACAACACGAGATGATTCACGACGCGGAAAGACCTTACGTGTGTATATTGTGCGAGAAGGATTTTGTTCTAAAGACATCGTTGAGTAGACACATCGTGTCGAGCCACGGGGTCGATCCGACTCCCATTCTCGAGAGCGACAAGTGTACGAAGAAGGGCGCAGCATTGGCACAATCATGGCGAAACAAATTGATTAAAACGGAGGAGgtaagaggaggaggaggaggaggaggacgcAAGAGAGAAGCACCGAGCGATTCGTCGGAGGATGCCGATAGCTTTGCTCACGGTAATATGCTTGAAATCGAGACCGTATTCGTCTGTGAGATATGCACACGGGACTTCAATGATCGCGCCTCTCTGTGGCTTCACATTCGTGCGACCCACAAAGAATTTGCCGCGTTCGCTTGCGGAGTTTGTCTCAAAATATGTTCCGACAATGCTCAGCTCTTGAATCACGTAAATATGTATCACGGTGGCTCGAAATTGTTGGTCTCGGAGCAGAGAAGATATAGTTGTACGATATGTGGTAGGCAGCATGATTcccgaaaaaaattaatcactcACGTATCGATACACAACGTCGATCCGGGTTATGATCCAGCCAGTTTCGTTCAACTCAATGCAAACTATTacaacgaaagtttcaacagCAACGAGCCCAACGATCACTTGATGGATTTCGATCCGGAGGACGGTGACAAAATCGACTGTTATATTTGTTACAAGTCTTTTCCAAACGAGGATCACCTAATTCGTCATCAACGAAACGCTCACAAGTCCGAGGGTGTTGTGACGAGTAACCAAGTGACGATACCGAGCAATAATGGGCCCGCTTCTGTTGCCGTACCAGGGCTCAACGGAACCAAGGCGCAGTACCATTTGTTCTTTGTTTGCGAATTGTGCGGTAGTTCACATCCGAGCAAATGGGAACGTTGGCTCCACGTCAGTGGCAATCACAGCGAGGACCCATCGATGAGATGCGAACGAGAGGATTGTGGCAAGATTTTTGCGACGAAGGCACTCCGAAATGAGCACGCGCAGCACCATCTCATCCAGGGATCATCACCAAACACTTGCGAAGTATGCGGCAAACTTTGGGGAAGTCGGGTTGATTACTGGAAGCACGTGATGGGGGTACACTCGGACACGGTGCCGTTGATATGCGGCGTTTGCCTCAAAGTATTTCCCGATGTCGCTAAACTCAGTAGTCACGTTAAAACGAATCACTGGCCGCTGACGAACGGTGACTTTAGTTGCGATATTTGTGGCAGACCCTATTCCAACAAATCAAAAATGTCGAGGCATCGAAAGATTCATGGGGTCGTGGAGGTCGATTCGACATTAGGAAACAGCGGTGATACGGGCGGTAGGGCTGCTGCTGCCGGGGATATTCGCAACGAGACGCGGGCCTACTACGAGGAAAAGAGCCCGAAGGAAGTTCAATTAACATGCGAATTGTGCACCGATTTGAACTTTGAAAATTGGCAATCGTTGTGCAATCATCGACGAATGATTCACGGCCTCTTTCCGTGCGATCTTTGCAACAAGTGTTACGGCAGAACGTCCCATCTATGGAAGCACGTTAACCGAGTTCACAAAGGACACGAGGACGTAACATGCCGATACTGCATGAAAACGAGCGCCTCCAAGGACCATCTAATGGCGCACATTGCCAAAATTCATCGTTACGAACCCGAGAACAAGCTCGAAATGATGATGGTAGTGGGAgaagcggcggcggcggcggcggcggcggcggcgacggCAACGGTGACGggtgaggaggaggaggaggaggaggaagaggacgGAGAAGGGGAACaagaaacgagaaaaagaagaagaagaagaagaaagggTGGTGATGCATCGAGTCTCGGAGTGATTGGCGAGGATGATGAggctggtggtggtggtggtggtggtggtggtatcGGTGTCGGCGTCGGTGTCGGTGTCCATCACTGTGACAAATGCCAAAAGAGTTTTCACAAGCGTTACCTGTTGCGACGTCACATGAAAGGTTGTCAAAATTATCGAAAAGATCCGGGCGCGTTGCTAACCCGTTGTCGAGCTTGCGAGAGAATATTCAAAGATCGTGCGAGCCTCCAGAAACACATTGAGAATCATCATAGCGAGTACACGTGTCACTTGTGCAACGAAACGGTTACCTCGAAACTCGGTATAATGACCCACAATCGCGTTAATCATCTCCATCATCCGGATCTGACCTGCGAGAATGGTAATTGTAGAAAATTATTCCGTACCAAGGAGGATCTCGAGTCTCATCGTAAGGATCACAAGTATCACAATACGCCGAACGTTTGCGATTTTTGTGGCGACACCGTCGAGAATAAGCTCAAATTGAAGATGCACGTATTGTCGCTCCACCGAAACGAAATTGGCGTCTCGTGCGGCGTATGTCTCATACCGATGAAAGATCCGAAAGATCTCAAGAAGCACGTCGAGGACGAGCACGAGGGTGTCCTGCATAAACCGAACACGTGCCAAGTTTGTGGCAAACGTTACGCCTCCAAGTGGAAAGCTTTCGATCACACGAAAAAGTGCCACGGTAAAGTATTTCGTACGTGCAAACAATGCCTCGCGGTATTTACCACCGACGCGGATATACGTCATCATTACGAGCACGTGCACAACATACCGAAGGATCAGTTGGCCGGTTTTGAAAATCGTCTCCTCGACTCTCGAACCGACGATTGTGACGCGATAGTCAAGGACGAGCCAGAAGATTACGAGTACGAGGTGCATCGCGACGGTACCGCCACCGTTGGTCTCTGCGACGAGAACGACGCGTACGATTTTAAACGCCGGAgaagcggcggcggcggcgtcGGTAAAAACCACCGTAATACCCACGACTGTGAAATTTGTCCCGAGATATTTCTTAATCGGGAGACGCTCTCGGATCATTACAGAAATGTTCATAACACCGATCCTGAGAGAATGTTCAAGAGGATCAAACTCGAGAGGGGCGAAGGAGGAAGATTTACGAGCACCGCCGCGATAGGTTCCTCCAAGAGAATGATGATGCGGGAACGCGAAAATTTCGAGTGCCAAAATTGCTCGAGACAATTTTGTACCAAAAGCCTATTTTGGAATCACACGAACGTTTGTACGAGGCGTAACTCGGCCAACAGGGAAGATCCGAGATCATCCGCGTCGTTCGGTCAAACCTCCTCCATTCTTGAGGCtcatcttaaaaataacaatagaaTCAAGAGAGAACCGAGCGAAATTCCGGGACTCGACGAGACCAATTTGAATATACCTGATTTTAATCTCTTTGAAGATATAAATATGCAGCTCTCGGAGCAAAAACCTATTCCTAATTTGATGCCACTGTCGGAATTGAGACGCGTGGGTGTCGGTGGCAGCGGAGGCGACGGCGGCGGCCTACTCCTCTTACCGTCCTCGAACGAAAAATCTTTGAGAAAAGACTCGAGAAAAGATTCGAGAAAGGTATACGACGAATCTACCAATACCGTTTGCATCTGTGAGGTATGTGGCAAGCAGTGGCCGGCTAAAAAACATCTTTGGCAGCATTTGATACGTTTTCATCGGGCCGAAGCTGCTGTTACATGTGGCGTTTGCCTCAAGCTGTGCACCGATTATGAACAATTGGGACAGCATCTGAGGACAACGCACGAGTCTATATTGTCCCGGGAGGGTAACAATTTTACTTGCAAAACATGCGGACGTTATCACAATGCGAGAAGCAAACTGTTGTTGCACATGAGCATACACATAAACAATGACAACGGTGGTACGGCTTGTTGGTGTCCAAAGTGCGAGAGGAGCTTCGAGAGCGAGGAAAAACTTCACGAGCATACCCGAGCTTGTGACAGGAGCCACCCCACCATTTTCGAGGAGGAGCACAGCGTCGATCTTGACACCGATCGGGAGATCAAGATCGAGGACGACAAGGGAAGTTTGATCGGTGACGGTGCTTCGCTCACGGGCGAGGACGAGGAGGAGGAAGTTGATTTCTCGGATCAGCGAGTACGAAGGAATTCTGAAAATACCGAAAATTCAGAAAGCAGCCGCGGTCGTGCTCGTACGCATAGCGATAGTGACAGCAgcgaggaggaggaagaggacgagggggagggggaggaggaggaggaggaagaggaagaagcaGAGGCGGAAGACACCGAATCGCGCACGAACAGCCGAACAACTGGTCCAGCTACTCGTCACTCGGAGACCGAGGAGGAAAACGATATCCGTGAAAAGAGTCCCATTGACATTCCTCCCAGTGACAGCCCCAAAGATGGGAAAGATAATAGTGATAACGTGTCAATCGTtgcgaaaaacgaaaataagaaattgataacgaaaattcCTGAGTCGAAGCAAGAACATAAACACGCGAAGGAGAATGAAAATACGAATGAACCGATCGAGGCGCCACCACAAGTCCAAAATGAAACGGAGAAAAGTCCATCCAATTCAACGaacaatttagaaaaaaatggtatatCGACGATGCTAGGGCCTACGGCACAACACGACAATGATAACGTCGATGACgaggacgatgacgatgacgatgacggaCCGCCTATACTGAGTCCAATGATGCCACTCTCGACGGAGAACGCAATCCAAGAGCGGGACGATGTCGCGAGCCACCGGCTCAGTCCCATGCTCTCGTTCAACGATAACGAGGAGATAAACCCTCATCCAATTTCTACTGAAATAACAGAAACTGTTGAAGAACCCCATCGAACCGCTGAATCATGTTCACCGAACAACCAACGATTTTACGATGATGATGATTGCGGTGAACATTCGAACGAAGAGTTGGCCTCGGATGAAGAACACGACGAAGAGACCCTCGAGGACGAAAATGAGGAATTGGACGACGAGGACAGTAGAATTCACGTGGTGAATCCTGACGACGAGTATCATTCGGACGACGATCGACCACCTGAGGACGACAACGAtcaagaggaggaggaggaggaggaggaggaggaggctgaggaggaagaagaagaaggtgaTCGGGAGGAACCAGAACTCGAAAATGAAGgtgaagaggaggaggaggaggaggaggaaatagaggcagaggcagaggagGAAAAAAGAGGCACGGAGGAGAATTTGGAAATGCACCAGGAAGAGGAAGTGATCGAAGATATGGAAGAGGGTGAAGGAACAATAGAGGATGATAACGACGTCgatgaggaggaagaggaggtaGAGGATGAGGAGTTAACTGCTGAGAATTCTTTGCAGATACACAATTTGGACGGAACTGTATTGATGGTTGCCAATGATGCGGACGGTAATCAAATATTGATTCAACGAAATGTCTCCGACATGGAAAATGATGAATCCATCGGAGCACTTACAGGCTACATCTACGAGGATGATGACGAGTACGATTTTGCGGGATTTCAAGTCGAAGACGGAGGAATCCACGTGGAGGAAGCGAGACGGGGTAACGGCGAGAGTAgcgaggaggaagaggaggaaagAGAAGAGGAGGTTATCCTCGAGCAGCCGGATGAAGACGAGAGGGAAATTACGGAGGCTGAGGACGAAAAAGAGCCGCGACAAGATTACGCTGACGAATCGAACCAAGGGGAGATGGAAATGCGGACAACCGCGAAAAACGATGATAACGACAACGACCGAGTTAGACAGGATCCGAGTGTCACATAG
- Protein Sequence
- MEPSKERYNELCRLCASYDAVKMDIFGNEGKNRQLVDKIQTCLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPSGSNATRKQIENGVESYSELRSELLKEKEKMPILIPEAPIVNPNAALGTPPRLNSDGEGDHEIEEIHNVSGTEDGVAKESVFATNASFEDTDDRKSDEYEMDMETNPSDFLEMTPMVTEELDETSIKKSQASKTRNMMETFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGAKVVTDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRTNLEEHIKSRHTGLPPPPELPVAYVQPNNRYRCKTCPKMYTNVTDLNKHTRVCAADAATKEKQQQRSIKKIPRKIKSRVDTSDISSSSGTTDTEDESNNDYRNAEAKLSKNPQLTILKQALTKGAESLKRDYEDRRNQAAGAGGGNNKPPAAKVARIENSEGPARKRWYCEMCPQNFTSVDKLKQHEMIHDAERPYVCILCEKDFVLKTSLSRHIVSSHGVDPTPILESDKCTKKGAALAQSWRNKLIKTEEVRGGGGGGGRKREAPSDSSEDADSFAHGNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNANYYNESFNSNEPNDHLMDFDPEDGDKIDCYICYKSFPNEDHLIRHQRNAHKSEGVVTSNQVTIPSNNGPASVAVPGLNGTKAQYHLFFVCELCGSSHPSKWERWLHVSGNHSEDPSMRCEREDCGKIFATKALRNEHAQHHLIQGSSPNTCEVCGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVAKLSSHVKTNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGVVEVDSTLGNSGDTGGRAAAAGDIRNETRAYYEEKSPKEVQLTCELCTDLNFENWQSLCNHRRMIHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCMKTSASKDHLMAHIAKIHRYEPENKLEMMMVVGEAAAAAAAAAATATVTGEEEEEEEEEDGEGEQETRKRRRRRRKGGDASSLGVIGEDDEAGGGGGGGGGIGVGVGVGVHHCDKCQKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSEYTCHLCNETVTSKLGIMTHNRVNHLHHPDLTCENGNCRKLFRTKEDLESHRKDHKYHNTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHEGVLHKPNTCQVCGKRYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDADIRHHYEHVHNIPKDQLAGFENRLLDSRTDDCDAIVKDEPEDYEYEVHRDGTATVGLCDENDAYDFKRRRSGGGGVGKNHRNTHDCEICPEIFLNRETLSDHYRNVHNTDPERMFKRIKLERGEGGRFTSTAAIGSSKRMMMRERENFECQNCSRQFCTKSLFWNHTNVCTRRNSANREDPRSSASFGQTSSILEAHLKNNNRIKREPSEIPGLDETNLNIPDFNLFEDINMQLSEQKPIPNLMPLSELRRVGVGGSGGDGGGLLLLPSSNEKSLRKDSRKDSRKVYDESTNTVCICEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTDYEQLGQHLRTTHESILSREGNNFTCKTCGRYHNARSKLLLHMSIHINNDNGGTACWCPKCERSFESEEKLHEHTRACDRSHPTIFEEEHSVDLDTDREIKIEDDKGSLIGDGASLTGEDEEEEVDFSDQRVRRNSENTENSESSRGRARTHSDSDSSEEEEEDEGEGEEEEEEEEEAEAEDTESRTNSRTTGPATRHSETEEENDIREKSPIDIPPSDSPKDGKDNSDNVSIVAKNENKKLITKIPESKQEHKHAKENENTNEPIEAPPQVQNETEKSPSNSTNNLEKNGISTMLGPTAQHDNDNVDDEDDDDDDDGPPILSPMMPLSTENAIQERDDVASHRLSPMLSFNDNEEINPHPISTEITETVEEPHRTAESCSPNNQRFYDDDDCGEHSNEELASDEEHDEETLEDENEELDDEDSRIHVVNPDDEYHSDDDRPPEDDNDQEEEEEEEEEEAEEEEEEGDREEPELENEGEEEEEEEEEIEAEAEEEKRGTEENLEMHQEEEVIEDMEEGEGTIEDDNDVDEEEEEVEDEELTAENSLQIHNLDGTVLMVANDADGNQILIQRNVSDMENDESIGALTGYIYEDDDEYDFAGFQVEDGGIHVEEARRGNGESSEEEEEEREEEVILEQPDEDEREITEAEDEKEPRQDYADESNQGEMEMRTTAKNDDNDNDRVRQDPSVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439674;
- 90% Identity
- -
- 80% Identity
- -