Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: -
Assembly: GCA_963989365.1
Location: OZ022416.1:16377843-16390906[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00038 0.053 14.8 0.5 2 23 536 557 535 557 0.97

2 14 8.6e-08 1.2e-05 26.2 1.1 1 23 567 589 567 589 0.99

3 14 1.2e-06 0.00017 22.6 0.9 1 23 595 618 595 618 0.96

4 14 0.0096 1.4 10.3 1.3 1 23 624 646 624 646 0.98

5 14 4.3e-05 0.0062 17.7 1.4 1 23 652 674 652 674 0.96

6 14 0.00085 0.12 13.6 4.6 2 21 737 756 736 757 0.93

7 14 0.01 1.4 10.3 3.4 1 23 785 808 785 808 0.95

8 14 4.6e-05 0.0065 17.6 2.0 1 23 842 864 842 864 0.98

9 14 0.00017 0.024 15.8 1.2 1 23 870 893 870 893 0.95

10 14 1.3e-05 0.0018 19.4 1.1 1 23 899 921 899 921 0.98

11 14 2e-07 2.8e-05 25.1 0.6 1 23 927 949 927 949 0.98

12 14 3.7e-05 0.0052 17.9 1.4 1 23 955 977 955 977 0.98

13 14 8.3e-05 0.012 16.8 4.1 1 23 983 1005 983 1005 0.97

14 14 0.00043 0.062 14.6 0.5 2 23 1012 1034 1011 1034 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00038	0.053	14.8	0.5	2	23	536	557	535	557	0.97
2	14	8.6e-08	1.2e-05	26.2	1.1	1	23	567	589	567	589	0.99
3	14	1.2e-06	0.00017	22.6	0.9	1	23	595	618	595	618	0.96
4	14	0.0096	1.4	10.3	1.3	1	23	624	646	624	646	0.98
5	14	4.3e-05	0.0062	17.7	1.4	1	23	652	674	652	674	0.96
6	14	0.00085	0.12	13.6	4.6	2	21	737	756	736	757	0.93
7	14	0.01	1.4	10.3	3.4	1	23	785	808	785	808	0.95
8	14	4.6e-05	0.0065	17.6	2.0	1	23	842	864	842	864	0.98
9	14	0.00017	0.024	15.8	1.2	1	23	870	893	870	893	0.95
10	14	1.3e-05	0.0018	19.4	1.1	1	23	899	921	899	921	0.98
11	14	2e-07	2.8e-05	25.1	0.6	1	23	927	949	927	949	0.98
12	14	3.7e-05	0.0052	17.9	1.4	1	23	955	977	955	977	0.98
13	14	8.3e-05	0.012	16.8	4.1	1	23	983	1005	983	1005	0.97
14	14	0.00043	0.062	14.6	0.5	2	23	1012	1034	1011	1034	0.93

Sequence Information

Coding Sequence: ATGGATGCAGCTGAATATGTAGGATTTGCTACGCTTAGATTCGTTGAAGAGGAAGTTGAGTCTTTTCGCACTACTGGCTTGGCCTCTATTTATACTGCTGAAGCATTGGCTATTGTCGAAACTTTAGAAATTATTGCCAAGCTTGGTGCCAGGGAATATACAATCTTTTCCGATTCTAGAAGTGTACTTCAGGCTTTAAAGGGGTATGTCAAATTATCTGGTTGCtacataataatattgattaaGGAAAAACTACGCAAATTAGAAGTCGACGGGAAAAAAGTGCTCTTTGTGTGGATTCCGGCAAATAAAGGTATCAAGTTTAATGAATTAGTGGATGTAGCGGCTAAGAATACAATTCGGCAGGGACGAGATTCCCAATTTCTAATCCCCAGCTCAGACTTGAGAGCTACTTGGCGAAGTGTGATGAACAATGAATTCGAAGAGTGGTGCATTGTCTCCAGTCAGGAGAAAGGAAAAGAATACTTTGAAAGATTCTATGAGAAAAAATCGTACCCTTGGTATGATAAGTTTAAGCTACAACGACGATCAATCGTTTTGATAAACAGGCTGAGGAGTGGTCATTCCTCGCTGAAGGCGAGTCTATTCAGACACCATATAATAGATTCCGAATTCTGTGATTGTGGGAAGTCCATAGAGACGGCTAATCATATATTCTGGCAGTGCCCTATATGGGAAGCTGAGCATAACATGGAGCCTGAGGAAACCGTAATTTTTGGCCATTCCGAAGAAAATGTTAATAAcgatatcaaaaaatttgaagcACACAAAAGAGAGGAGAGCGAAGGAACATTGTACGTGAATAACGAACAGAGACGatcaatggaaaaattatgcTGGTCTGATATTTGTAGAGTTTGTGCCAATTCCAACGATCATATTATACCGATATTCGAGGGTGAAGGAGTGCAGCATGATTTATCTGATAAAATTCACAAATATCTCCCGATTCGGgtTGCCAAAACCGATACTCTGCCGATACAATTATGTTATCACTGCGCAGCGACGATTCTCGCCTGGCACGAACTACTCGAAGGTTGCGCAGACGCGGAGAAACAACTTTTGCAGATGCAATTCGATCGCAACTACAATGAACAGAACAAATCAAAATACAGTGAAAATTTGAGCGACGGACCGGTCGACGATCCTGAATCAATGTCCATCGATAAGCAAGCATTGATTTCAATCGGTCAACAGGAAGAGGAAACGGAACAAGGCGTCATCGAAGAAGAATCGACTTCAAGGTCCGATAGAGCTGTGGAGACATTTTCAGTATTCCTTAACAAGCAACATATATGTCGAAATCCAAGAAGGATTAAAAATGAAGTTAGCAAAGAAACATTTGATCAAAGAGAAAATCTGATATGGCAAGCAAATTGCATTAAAGAAGAAACTCTTATGCTGGATATAGATTCATCAGAGCCTGGAAATGTGAATAACGAAGGCGAAGATGCAGAGGAAAGAGTTCCGAATAATCAACGATGTATAATGAAACATGTTCGCAGCGCGGAGAACGATGGAAAACGTTTGAGAAACGCAGAAtcccatgaaaaaaatgataatgattCGAATCTCGTTGGAATACAATGTACAATTTGTTCCAAAGAATTGAGGGATACCGATGAATTAAGAAATCACACGAGAGAGCACAAATACTCGTCAAACTCAAGAAAATTGTACAAATGTAACGAATGCTCGAAAGTTTTTCGTGTCAAGGATTCTCTAATTCGTCATCAACGTATTCATCGTGACGAGAGACCATTCACTTGTCACGTGTGTGGCAAACAATTTCGGGATTCCGGTGGTTTATCGCGACATATCAAAGACGTACatacgaaattgaaaaatttcacttgCGACATATGCTTCAATAGCTTCTCCTCGAAAGCAACGCGCGACGATCATCGGAGAATTCACACTGGAGAGAGACCTTACAACTGCGATAATTGTGATAAATCCTTCAAATCCCGAGCTTCACTTTACATACACAGTAAACTTCACACCGACGAATATCCatcCGACGAAACGAGAGACACGAGTTTCCAGAAATCATTGAAAAGAGTAACGAAGAAGGTGGTAACTCAAGGTATTTCGCCTCATGGACAACACCAAGAGCTATCGATCGTGGACGAGCAGTCCATGAGTTCCGAAGAAAAGAACGCACCAAAATCGCACGATATGATATTATCGTGTGACAAATGCGCGAGAGTATTTAAGAGAAAAACCAATCTGAGGAGACATCGGTGTCACATTAGAAATAAAGAGGAAATAGAACGCAAGGAAAATGATGATACGGAAAATTGTAAAGAGCTCATTGCGCACACATTGAACTATTGTTGCAATTACTGCGATTATACGACAGGAAAGAAGAAGTTATTGAAACTTCACATAAGTCAGGATCACGAAGAAACTACGAGgaataataaaaagagaaaaaaacatggtaACGCGGAGGGGGAAATAGCGGTTAAGGCGAGAATGGAAGCAAACGGTCGTGTCTATTATCACTGCAACGAGTGTGGCAAAAATCTATTTTCTCCTTATACATTCACGTGGCATATGAGAATTCACACGGGTGAGAGAACATTCACCTGTCACTTGTGTGGCAAACAATTTCGCATTAATCAGGGTTTGGCTCGTCATTTGCTAGAGACTCacgcaagaataaaaaaattttcttgcgacatttgttctcgaatgttctcaaCGAAACGCAACGTCGAGGATCATCGACGTATACACACCGGTGAACGTCCCTTCGTTTGCAACATATGCGGCAAAGCTTTCAAGCAAAAAGCCTCGCTCTTCGTCCACAATCGTACGCACACCGATTCTTTTCCGTTCAAATGTAATTATTGCAATCAAGGCTTTCGTACTAGGCCGTCTCTCATTTTACATCTCACCAAACACACCGGTGAAAAGCCTCACACTTGCGATATATGTCATCGCGCTTTTCGGATCAAGTACGAGCTTAAGCGTCATCGTCTAATACACTCTGAAGAAAAACCTTGGCGATGTATCGACTGCGGTATGGCCTTTCGACAAAAACGATATCTCGTTAATCACCGAAGAATCAATCACGAGTCTAGGAGAAATCTGAAGAATCAGTGA
Protein Sequence: MDAAEYVGFATLRFVEEEVESFRTTGLASIYTAEALAIVETLEIIAKLGAREYTIFSDSRSVLQALKGYVKLSGCYIIILIKEKLRKLEVDGKKVLFVWIPANKGIKFNELVDVAAKNTIRQGRDSQFLIPSSDLRATWRSVMNNEFEEWCIVSSQEKGKEYFERFYEKKSYPWYDKFKLQRRSIVLINRLRSGHSSLKASLFRHHIIDSEFCDCGKSIETANHIFWQCPIWEAEHNMEPEETVIFGHSEENVNNDIKKFEAHKREESEGTLYVNNEQRRSMEKLCWSDICRVCANSNDHIIPIFEGEGVQHDLSDKIHKYLPIRVAKTDTLPIQLCYHCAATILAWHELLEGCADAEKQLLQMQFDRNYNEQNKSKYSENLSDGPVDDPESMSIDKQALISIGQQEEETEQGVIEEESTSRSDRAVETFSVFLNKQHICRNPRRIKNEVSKETFDQRENLIWQANCIKEETLMLDIDSSEPGNVNNEGEDAEERVPNNQRCIMKHVRSAENDGKRLRNAESHEKNDNDSNLVGIQCTICSKELRDTDELRNHTREHKYSSNSRKLYKCNECSKVFRVKDSLIRHQRIHRDERPFTCHVCGKQFRDSGGLSRHIKDVHTKLKNFTCDICFNSFSSKATRDDHRRIHTGERPYNCDNCDKSFKSRASLYIHSKLHTDEYPSDETRDTSFQKSLKRVTKKVVTQGISPHGQHQELSIVDEQSMSSEEKNAPKSHDMILSCDKCARVFKRKTNLRRHRCHIRNKEEIERKENDDTENCKELIAHTLNYCCNYCDYTTGKKKLLKLHISQDHEETTRNNKKRKKHGNAEGEIAVKARMEANGRVYYHCNECGKNLFSPYTFTWHMRIHTGERTFTCHLCGKQFRINQGLARHLLETHARIKKFSCDICSRMFSTKRNVEDHRRIHTGERPFVCNICGKAFKQKASLFVHNRTHTDSFPFKCNYCNQGFRTRPSLILHLTKHTGEKPHTCDICHRAFRIKYELKRHRLIHSEEKPWRCIDCGMAFRQKRYLVNHRRINHESRRNLKNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -