Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: -
Assembly: GCA_963989365.1
Location: OZ022423.1:14043845-14048627[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.63 90 4.6 2.6 1 23 368 390 368 390 0.94

2 19 0.013 1.8 9.9 0.6 2 23 438 459 437 459 0.97

3 19 0.0047 0.66 11.3 3.4 1 23 548 570 548 570 0.94

4 19 0.0047 0.67 11.3 1.5 1 23 574 596 574 596 0.96

5 19 0.0021 0.31 12.4 4.5 1 23 690 712 690 712 0.98

6 19 0.019 2.7 9.4 0.4 3 20 721 738 719 740 0.92

7 19 0.0012 0.17 13.2 0.6 1 20 749 768 749 773 0.93

8 19 0.00028 0.04 15.2 4.2 1 23 875 897 875 897 0.98

9 19 5.4e-05 0.0077 17.4 3.9 1 23 969 991 969 991 0.97

10 19 0.00059 0.084 14.1 1.1 1 20 996 1015 996 1017 0.94

11 19 0.03 4.3 8.8 0.6 2 23 1028 1049 1028 1049 0.97

12 19 1.4e-05 0.002 19.2 0.7 2 23 1088 1109 1087 1109 0.97

13 19 2.8e-05 0.004 18.3 1.6 1 23 1114 1136 1114 1136 0.95

14 19 0.00013 0.019 16.2 1.7 1 23 1142 1164 1142 1164 0.98

15 19 5e-06 0.00072 20.7 0.4 1 23 1180 1202 1180 1202 0.95

16 19 1.6e-06 0.00023 22.2 0.3 1 23 1208 1230 1208 1230 0.99

17 19 2.8e-05 0.0039 18.3 1.1 1 23 1236 1258 1236 1258 0.98

18 19 0.00016 0.023 15.9 4.1 1 23 1264 1286 1264 1286 0.96

19 19 0.012 1.7 10.1 0.4 1 20 1292 1311 1292 1313 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.63	90	4.6	2.6	1	23	368	390	368	390	0.94
2	19	0.013	1.8	9.9	0.6	2	23	438	459	437	459	0.97
3	19	0.0047	0.66	11.3	3.4	1	23	548	570	548	570	0.94
4	19	0.0047	0.67	11.3	1.5	1	23	574	596	574	596	0.96
5	19	0.0021	0.31	12.4	4.5	1	23	690	712	690	712	0.98
6	19	0.019	2.7	9.4	0.4	3	20	721	738	719	740	0.92
7	19	0.0012	0.17	13.2	0.6	1	20	749	768	749	773	0.93
8	19	0.00028	0.04	15.2	4.2	1	23	875	897	875	897	0.98
9	19	5.4e-05	0.0077	17.4	3.9	1	23	969	991	969	991	0.97
10	19	0.00059	0.084	14.1	1.1	1	20	996	1015	996	1017	0.94
11	19	0.03	4.3	8.8	0.6	2	23	1028	1049	1028	1049	0.97
12	19	1.4e-05	0.002	19.2	0.7	2	23	1088	1109	1087	1109	0.97
13	19	2.8e-05	0.004	18.3	1.6	1	23	1114	1136	1114	1136	0.95
14	19	0.00013	0.019	16.2	1.7	1	23	1142	1164	1142	1164	0.98
15	19	5e-06	0.00072	20.7	0.4	1	23	1180	1202	1180	1202	0.95
16	19	1.6e-06	0.00023	22.2	0.3	1	23	1208	1230	1208	1230	0.99
17	19	2.8e-05	0.0039	18.3	1.1	1	23	1236	1258	1236	1258	0.98
18	19	0.00016	0.023	15.9	4.1	1	23	1264	1286	1264	1286	0.96
19	19	0.012	1.7	10.1	0.4	1	20	1292	1311	1292	1313	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTGGATATGGATACGGCGGAGGATTCACACGATGACACGATCGAAGAGACAGTACCCGAAGTTTGTCGGGTCTGTTTGCTCGGACATATGATTATGCGCGAtcttttcgtcgaaaacaatgtCATTTCGCTCTCCACCAAAGCTATGAGCTTCGCTAGCGTTAAGATGGTACCCGAAGATGGTCTGCCGGCCCAAGTTTGCTGTGACTGTGCCGACAAATTGGAAGCAGCGTACGAATTTAAACTTCAAGTGGAACAGGCCGACAATGTACTACGACAAAGATACGACGGACTCAATATTAAGGAAgaactttttttcaacgaagTAGAAGTTCACCTGGAAGCGGAAAGAGGCGACGACGTACATAGTCTCAACGTCGATGCTCACTATCAAGCGACCGTCGATAGCTTGAACGGCATTGATACAAATGGGCAAAAGTCTAATTTGCTCAAGGATCATTTGGCACTTTTGGAAGTGGAAAAACTCTCGAAACAACAAAGTACCCtggcagagCATAAACATGACGAAGTCCTGGATGAAGAAAATGTAGTATCCGCGATGCTGGAGGCAAACGAGGGTCACGCACATTATTTGGACGAGAGCGAAGGCACCGTTGTAGAGTTGGGTGATTGTAACGACGTGGATTATCGTGAAACGGTAAAAGTTCAGGGAATTCAAGATCCCGATGGGATAACGGCGGAAGAACACAATTACATAATGCAGCAAGGCTACACATTGACGCGCAACGAGGGTGAAGAATTGGTGTCGCAGGAAAGCGTTGATTCGGTAAACAATGAAACGGTTAATTATTTGGCATTGATGGAGGACGAAATGAGGATGAAAGAGGATCATCATCAccataatcatcatcatcatcatcatcaagaGGAAACGATAACTACGGTCGAGTCTGAACAGAAAGTACAAGAGCATattgaaaaaactgaaatttcacCGAACGTAACACGTCGCAGTAAGCGTAAATTGAACAAACGTCGTCGAACGAGCGACGAGGACAATTATTTCGAGAATTTGAATCTAAGCAGCAGATTAAAGCGAACGCAATCGCAGGAGAAGagtgaaaaattgtatttcctcTGTTATTTGTGTGATAAAAGATTTCTCTCCAAGGAAATTTTGAAGGAACACATGCACTCGCACGAGGAAGTGAGACGCGCGTTATCcttaaaaaaacaagaaaaatccgATAAATCTTTGACAAGTCCGACAAAAAGTCCCGTAGCGTCGACGAGCACGACTCCACCGATTGCCAGTAATAATTTATCCGGAAAGAAAGCCAACAAGTGCCCCTATTGTGGCAAAGAATATCTCTATGTAATATCATTCAACAAACACCTTCGTCAACACGAAAAAAGCAAAGAATTCGATTCCAAAGATTCGTCCTTTTCACAGGAAGATTCTGGGCGTGACGAGGCTAAAGATTCTTCGGATTATCTCGATTACGACGAGACAAGAGAATCCACACATACGAACAATCGTACGAATACTAATAAGAACGATAGTGTCGTCGATGATAATGTGGATGACGAGCAACACTTCGGAATGGAGGCTGAGGAAAATCCGTCGTCCAAAAAACACAGACGAAGATCAATGCGCAATGAAACAGCCGCTTACACGTGTGAAAAATGTCATCAAAATTTTGCCAGCAAACGCTCACTCTTCGAGCACTCGAGCgaacatttttccatttttaaatgcAGCACCTGCGAGCGTGAATTCGACGAATTGGAAAAACTTCGTAAACACAGAACCGAGCACGTTGTCGAGGGTGTATTGTCGCAACAAGATCTCGAGGGTAACGTTTACGAGAACGAATTCGATGCGAAATTGCAGCACGACAACGATGCCAATGAAATTTACAAGAACGACGATTTTGGGGGAAATCAGTTGGAAAACTGTGATCAACAGGAGGATCAAGACGATGACCAGGATAATAACATTGACACAGAGAACTCCTGGCATTTGGAAGTTGAAGGCGAGGACGATGATCACgacgatataaaaaatatttcaggaaATTGGACGGATGGGAAAAATTACAAGTGTCCACATTGTATGATAATGTGTTCGAGTAAAAAATCGTTGATTCGACATATGGAGTATCACGAAGAGGCGACGCAACAAATTTGCTGCAAATTATGCAAAGTCGAATTCGCCAGTAAAGAAGAATTGCAACAACACGTCGAGCAGGAATACCCTTGTaaaacgaaaatattcaaatgtaccgattgcaacaaaatattcgGTAACGAATTGACATTGAGAAATCATTTGTTCGCGACAGATCATAAAACGATTATTCATGGAGAACCTTATGATCCGAACAAAAGAATAAAGAGAGTGGCTGCGAAGGCAGCAcagaaaataattgataaaataaagaCGGAAGACGATTTGGAGGATtcggatgatgatgatgatgatgatgatgatgatgatgataaattAAGTAATTCGGAAAACCGGGAAGAACACATGGATTTGAGTGATTCGAAGATGAATAATCTTCAATGGAACCGTCAAGATGTTAAAATGGAGGATGCAACGTTACCAAGTAAAATACAAACGCAACGTAATCGTCGAAGACACAATTACGAGTGTGAAACTTGTGAACGTAAATGTAGATCGAAGCAATCATTGACGAAGCACATGTTGCAGCATCGTGCCAAAGAGGAGAGAATCGATATAACGGAAAACTTGGAAAGTTTGCGCGGAAACAATTCTGCACAAATATCCGAAAGATCAGTATCGTTCAACAATCAACAACAAATAAATAGAACGATCAATTTCAAGAGAGAGGAAAGAACGGAGGACGAAGAGGAGAACGATGACAATTCGGATTTCGAGAGTGGTCTCGATTGGCCGGTGGACAGTCACGAGTGTCCGACGTGTAAGAAAAAATACAGTACGAAAAAATCCCTGCTGCGTCATCAATTGTTACACCAAAAGCCTAATTTCGAGTGTGACATTTGCAACGTGAAATTTTATCGCAAAGACAAACTCAAATCTCATTATGACAAATGCTCGGACAAGAATCCTGATCAAGTGAGAAAATGCAACATTTGCGGTGATACGTTTGAGAATAACGATATATTAAAAGAGCATAGAAGTCGTCACGTGGACGAAGGTATATTGACAGAGGAGGATCTTCGTGAAATCGAGCCAGGAATGGACGAGAGAAAAGAATCGACGAAGGTAGCTCGAAAGAGACGAACCGATATCGTTGGACTGGAATGTACGGAGTGCAATAAACGTTATACGTCGAGGAAAGGTCTTTTACGACATATACAAGTACACGAGGGTAAAAAGTATCTTTGTGACATTTGTCCGAAGAAATTTTATCGTCGGGAACACTTGAAGATTCATGTGGCTAAGCATAACATGATAAAACCTTACAAATGTCCACGTTGCACCAAACGTTTCATCAAAGAGGAACAATTGTCCAGTCATTTGTCGAAGCACGATCGTACCTTTAAAAAACCGAAGGAAACCGACACGTCAAAGAGATTTTTGTGTGAAATATGCTCAAAGAGCTTCACTCAATCAACCACACTTATTGCACATTTGAGAGCACACAATGGTATCAAACCTTACGTCTGCGAAGTTTGCGCGCGTCCTTTTACGACTAATGCCTATTTGAAAATGCACATGAGAACTCACACCCAAGAAAGACCCTATACATGCCAACATTGCTCGAGAGCTTTCGCTCGCGCTGATACTTTGGCAAATCATTTGACATCCCACACCGGCGAAGCTAAATATCACTGCAAATATTGTCCCAAAAATTTTCGACGTCTCAAATCTCTCAAAGAACACGTTTTCATTCACACCGGCCAACGACCCTACGCTTGCCCAACGTGCGATCGCCGTTTTAATAATAACGGAAGTCGTTACGCTCACAGCAAAAGATGCAAACAAAATCACTTGCAAAATTCTAATCGACCAACCAATAACTCTATCGGTACTCCAATGTTGCAAGAAAATATTGTACACAATCAGCTCGTACAACCTATCAGGCTTCATCAGTTGACAACTACTCATGAATTAATTTCCGAACACGATCAACAGACTCAAATACAATTGGTTAAATCACAGAATATCAAAACGATTACCATCGCCAGAACCAGCGACGATCTAAACAGATCTCAAATGATCCAGCATCAGGAAATACTCATGCCCCTTATTCTACCTTTGACCGTCACACTCAGCGATCCTGATGAAGAAGTCATTTTGCCTGAAGGCACGAAAATTTATACCACAGCTTAA
Protein Sequence: MDAVDMDTAEDSHDDTIEETVPEVCRVCLLGHMIMRDLFVENNVISLSTKAMSFASVKMVPEDGLPAQVCCDCADKLEAAYEFKLQVEQADNVLRQRYDGLNIKEELFFNEVEVHLEAERGDDVHSLNVDAHYQATVDSLNGIDTNGQKSNLLKDHLALLEVEKLSKQQSTLAEHKHDEVLDEENVVSAMLEANEGHAHYLDESEGTVVELGDCNDVDYRETVKVQGIQDPDGITAEEHNYIMQQGYTLTRNEGEELVSQESVDSVNNETVNYLALMEDEMRMKEDHHHHNHHHHHHQEETITTVESEQKVQEHIEKTEISPNVTRRSKRKLNKRRRTSDEDNYFENLNLSSRLKRTQSQEKSEKLYFLCYLCDKRFLSKEILKEHMHSHEEVRRALSLKKQEKSDKSLTSPTKSPVASTSTTPPIASNNLSGKKANKCPYCGKEYLYVISFNKHLRQHEKSKEFDSKDSSFSQEDSGRDEAKDSSDYLDYDETRESTHTNNRTNTNKNDSVVDDNVDDEQHFGMEAEENPSSKKHRRRSMRNETAAYTCEKCHQNFASKRSLFEHSSEHFSIFKCSTCEREFDELEKLRKHRTEHVVEGVLSQQDLEGNVYENEFDAKLQHDNDANEIYKNDDFGGNQLENCDQQEDQDDDQDNNIDTENSWHLEVEGEDDDHDDIKNISGNWTDGKNYKCPHCMIMCSSKKSLIRHMEYHEEATQQICCKLCKVEFASKEELQQHVEQEYPCKTKIFKCTDCNKIFGNELTLRNHLFATDHKTIIHGEPYDPNKRIKRVAAKAAQKIIDKIKTEDDLEDSDDDDDDDDDDDDKLSNSENREEHMDLSDSKMNNLQWNRQDVKMEDATLPSKIQTQRNRRRHNYECETCERKCRSKQSLTKHMLQHRAKEERIDITENLESLRGNNSAQISERSVSFNNQQQINRTINFKREERTEDEEENDDNSDFESGLDWPVDSHECPTCKKKYSTKKSLLRHQLLHQKPNFECDICNVKFYRKDKLKSHYDKCSDKNPDQVRKCNICGDTFENNDILKEHRSRHVDEGILTEEDLREIEPGMDERKESTKVARKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLSSHLSKHDRTFKKPKETDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYTCQHCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNHLQNSNRPTNNSIGTPMLQENIVHNQLVQPIRLHQLTTTHELISEHDQQTQIQLVKSQNIKTITIARTSDDLNRSQMIQHQEILMPLILPLTVTLSDPDEEVILPEGTKIYTTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00262827;
90% Identity: iTF_00266641;
80% Identity: -