Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: -
Assembly: GCA_963989365.1
Location: OZ022423.1:9933522-9935653[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.024 3.4 9.1 0.6 2 23 155 176 154 176 0.97

2 14 3.7e-05 0.0053 17.9 1.6 2 23 188 209 188 209 0.98

3 14 5.6e-05 0.0079 17.4 2.0 2 23 216 237 215 237 0.97

4 14 3.2e-05 0.0045 18.1 1.3 2 23 310 331 309 331 0.96

5 14 9.9e-06 0.0014 19.7 0.6 1 23 370 392 370 392 0.97

6 14 9.2e-07 0.00013 23.0 1.8 1 23 398 420 398 420 0.96

7 14 3.5e-05 0.005 18.0 0.6 1 23 426 448 426 448 0.98

8 14 3.5e-05 0.005 18.0 5.3 1 23 454 476 454 476 0.97

9 14 9e-08 1.3e-05 26.1 1.0 1 23 481 503 481 503 0.97

10 14 9.9e-05 0.014 16.6 1.0 1 23 509 531 509 531 0.97

11 14 3.4e-07 4.9e-05 24.3 3.8 1 23 537 559 537 559 0.96

12 14 2.7e-05 0.0039 18.3 1.3 1 23 565 587 565 587 0.98

13 14 1.1e-05 0.0016 19.6 1.6 1 20 593 612 593 615 0.92

14 14 0.00097 0.14 13.5 1.6 1 23 621 644 621 644 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.024	3.4	9.1	0.6	2	23	155	176	154	176	0.97
2	14	3.7e-05	0.0053	17.9	1.6	2	23	188	209	188	209	0.98
3	14	5.6e-05	0.0079	17.4	2.0	2	23	216	237	215	237	0.97
4	14	3.2e-05	0.0045	18.1	1.3	2	23	310	331	309	331	0.96
5	14	9.9e-06	0.0014	19.7	0.6	1	23	370	392	370	392	0.97
6	14	9.2e-07	0.00013	23.0	1.8	1	23	398	420	398	420	0.96
7	14	3.5e-05	0.005	18.0	0.6	1	23	426	448	426	448	0.98
8	14	3.5e-05	0.005	18.0	5.3	1	23	454	476	454	476	0.97
9	14	9e-08	1.3e-05	26.1	1.0	1	23	481	503	481	503	0.97
10	14	9.9e-05	0.014	16.6	1.0	1	23	509	531	509	531	0.97
11	14	3.4e-07	4.9e-05	24.3	3.8	1	23	537	559	537	559	0.96
12	14	2.7e-05	0.0039	18.3	1.3	1	23	565	587	565	587	0.98
13	14	1.1e-05	0.0016	19.6	1.6	1	20	593	612	593	615	0.92
14	14	0.00097	0.14	13.5	1.6	1	23	621	644	621	644	0.94

Sequence Information

Coding Sequence: ATGGATGCCCTATCTACGAGCAGTCAGGTTATGgatgaaaatattgttgGAGTGGAGCTTAAGGAAGAAACGGATGGGCGATTTAGTCAGACTTACATCGAGGATATCTGTCCAGGAACATTCGGCAAGGTTTTCCTACCAATCGACAGCCATGAAGTGGATTTTACGGATGAAATGGTTAAACTGGAGCTAGAAAGCCAATCGGGAGAACATCATATCTGGGCAGCCCAATTGGCAACAACAACTCTGTGCGAACAAGACGACTGTGGAATCCACAGAAATCCAGAGGAGACCATTGACGAGTCGGAAGAAAAATCTGTGGAACCTGAAGACGCAGAAAAAGAGGAGGAGAATCAAAACACCGGGGAGAACGAGGTCGAGGAGGTGAACAATCATCGAGATGAGCAAGAGATCGACAAGCCGGACGAGGAGTCTTGCGCCAACTCCAAATTCTACAAGATTCAATGTACCATTTGTAAAAAGTGGTTTCTGAACAACGACTCGATGATAACGCATTTGAGGAGCCACTGCGGTGGGGGGAATCTCCAAAACGGTGGTGAACAATGCCAAATTTGCGAGCAAAACTTTAATGACAATACGAGTTTGCACGCTCACATGTTAACCCACGTAGGCATGAATCCGGTCGAGTGCAACGTTTGCCAGAAGAGATTCGCGTACAAATGGTGCCTGAGAAATCACGTCCAAACGCACGTTGCAACGAAACCTTTCGAGAATTTTTCTCCAACCGGAAGTAATCTCGTACTCGTTAATACCGAGTCAGCAAGCCTTGGCTTACCGATTTCCGGGGCTGGTTATACTTTTGAAAGCGTTACAGATCAAAGAAAACTCTTCGAGGAACGTACAAGCTCCGAGGAGGAAAGGCGCAAGGAGACTAAATCCGAGAGCGAAACTTCGAGAAACGGTCTTCGTTGCGACGTGTGTAAATTGCGTTTCAAAGACAGAGAGAGCTTGAATCGACACACTCTGTCGCATATGAGCGAAGGAACCGCTTACAAATACGATATTTTCAGTGGAACTCTTCGCGAAACACCCAAACCGGAAATCGCCGATCCACGAACAGCTCAAACGAGCTCGATCACTAAACAATTCAAATGTACACTTTGCGAACGTTCTTTCGGGCAACGTACAGCTCTTAACAATCACATGCTCGCTCACAGCGGTGAAAAACCACACGCATGCAATATTTGTGAGAAAACGTACAAGCGTAAGTCCGAATTGATAAGGCATACGATGGTACACACCGGCGAACGACCCTACGAGTGCAAAGAGTGCCTCATGACTTTTCGAGAAAAAGCTAAACTGAATTCTCACATGCTCGTACACACCGGCGAAAAGCCTCATGAGTGTTACATTTGTCACAAAGCTTGCGCTCGAAAATCCGACCTCAACAGCCACATGCTTTCTCACACCGGTGGACAATACGACTGTAAAGTTTGCGACAAAATATTCACTCGTAAATCTGATCTCAACAGACACACTCTCATTCACACCGGGGAAAAACCGTTCGCTTGTGAACACTGCGACATGGCGTTTCGCGAGAGAACTCGCTTGAATTCCCACATGCTCGTTCACACTGGTGACAAAAGACACGCTTGTCACATCTGCGGTAAAAACTTCAGAGAAAAATCGTCCCTCAAAAAACATATGCTCGTTCACACCGGCGATCGACCTTACGAATGCTTCATCTGTAAAAAAACTTTCACCCTCAAAACCACTCTGAACAGCCACGTTCTCGTACATTCTGGCGAACGACCCTACGAATGCGACAATTGTCCAAAATCTTTTCGCGAAAAATCCTCACTCAGAAAACACTccgtttttcataataatgATCGTAATCACGAGTGCAATGTttgcttaaaaaaattcactcaTAAAGCTGATCTTGGCTCACACACCGCCATTGATCATCCATCTTAA
Protein Sequence: MDALSTSSQVMDENIVGVELKEETDGRFSQTYIEDICPGTFGKVFLPIDSHEVDFTDEMVKLELESQSGEHHIWAAQLATTTLCEQDDCGIHRNPEETIDESEEKSVEPEDAEKEEENQNTGENEVEEVNNHRDEQEIDKPDEESCANSKFYKIQCTICKKWFLNNDSMITHLRSHCGGGNLQNGGEQCQICEQNFNDNTSLHAHMLTHVGMNPVECNVCQKRFAYKWCLRNHVQTHVATKPFENFSPTGSNLVLVNTESASLGLPISGAGYTFESVTDQRKLFEERTSSEEERRKETKSESETSRNGLRCDVCKLRFKDRESLNRHTLSHMSEGTAYKYDIFSGTLRETPKPEIADPRTAQTSSITKQFKCTLCERSFGQRTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECYICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACEHCDMAFRERTRLNSHMLVHTGDKRHACHICGKNFREKSSLKKHMLVHTGDRPYECFICKKTFTLKTTLNSHVLVHSGERPYECDNCPKSFREKSSLRKHSVFHNNDRNHECNVCLKKFTHKADLGSHTAIDHPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00265916;
90% Identity: iTF_00439665;
80% Identity: -