Rmeg009074.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- ttk
- Assembly
- GCA_963989365.1
- Location
- OZ022415.1:42854797-42857008[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-08 7.5e-05 23.1 0.0 8 40 361 393 355 396 0.91
Sequence Information
- Coding Sequence
- atgggAGCCTCGGATCGTTATTGTTTGCGATGGAACAACCATCAGGCGAATTTGCTCTCGGTTATGGACGATTTGTTGAAACATCAGACGCTGACGGATGTGACACTGGGTGTTGAGGATGGTCGTTTTCTCAAATGCCATAAAGTCATACTGGCGACATGCTCGCCGTACTTTCGTACACTTTTCATCGAGGTTCCATCGAATCATCCGATAATACTACTGAAGGATGTGAGATATTCGGAAGTGAAGGCTATTTTGGAGTACATGTACAAGGGGGAAGTCAGCGTGGCGTCCGATGATATGGACGCTTTGTTTCAAGTGGCTGAGTTGTTGCAGGTCAAGGGTCTGGTTGCCGGTAATAAAATAGTTTCCGGAAGTGAATCAGCAGCGCCACCATCACCGACAGCTGCTTGTAGTACGAGCAGCAATCGTAATGGAGAAACatctcaaaattacgaaaacttAGAACCGAATTCTAGCCGGCGAAATTCGACCAACGTGCCATTAGCCGGGGGAGTTGAAACGCCCAATCATCAGGAAATTAATGAACCCAAACTTCCGATACCCGCTTGGCCAATGTCACCTTTTTTTCCGGCCGACGAACAAAAATCCGCGGTAGCTGCCTTGGCCAATTTTCATCCTTTTCTCGCTACACAATCTTTTCCCTTTTCCCAATTTCATGATAACGTTTCCGATCTTACATCTTCACGAAATACCAGTTATAAGGGATCAAACAAAGTTCATCAAGACACATCGATACTCAGATCAGTTCTCAATCCCGAACAAGATGATTCAACTTTGAGATTACCGGTTATTCGTCAAGACTGCTCCCGTGATTCCCGTCATCGCAGTCGCAAAAAAAGATCTACGAAAAACGATGATAGACGAAGCAGTTTTGATTTGTCCCAAAGGGCTTCAAGCCCACAGGAAAGCGATGCCTCTATGATGGAAGAAGAGGATAATAGAACGACTGTTCAAACTTTGGCCGAGGACACGAAATGTGgaGTTTCTAGTTACGCAGCATCTCAGAGGCAAGAAATAAAACGTTACAAAAACTACTTACCAGGAGACGTATGGGACGCTATCGCTGCGGTAAAAGGAGGCTTGAGCGCGAACAAAGCCGCCGAATTGTTTAGGGTTCCATCCAGAACTCTttacgacaaaataaaaaagctcGGAATACCGCCAACGAAACACAGACGAAGCGAGAACATGAGTAATGTTGGGAATGTGCAATACGATATCGGGGCCAATTCGAGCACCGTCGGATTCGAAAATATAACGAAAAGCACGAGCGAAGGCACGAGCGATCCGATCGAGAATCCAATTTCAACGATCGAGACCACCTTCGCTGAAATTCGAGAAAAATCAAACGTTTCTGAAAACCCGTTCGACATCGATCTAAAAAGTCCATTGCCACAAGTTAGCAGTGCAATTTCCCAACCCCAATCACCGAGTCAATCGGAAATTAAGGACAACGATAATGAAGCCAAAGATCTTACGGTAAGCCGTAGATCCAATGTCCACGTTATAGTTTCCCCGAATAGCACGATTTAA
- Protein Sequence
- MGASDRYCLRWNNHQANLLSVMDDLLKHQTLTDVTLGVEDGRFLKCHKVILATCSPYFRTLFIEVPSNHPIILLKDVRYSEVKAILEYMYKGEVSVASDDMDALFQVAELLQVKGLVAGNKIVSGSESAAPPSPTAACSTSSNRNGETSQNYENLEPNSSRRNSTNVPLAGGVETPNHQEINEPKLPIPAWPMSPFFPADEQKSAVAALANFHPFLATQSFPFSQFHDNVSDLTSSRNTSYKGSNKVHQDTSILRSVLNPEQDDSTLRLPVIRQDCSRDSRHRSRKKRSTKNDDRRSSFDLSQRASSPQESDASMMEEEDNRTTVQTLAEDTKCGVSSYAASQRQEIKRYKNYLPGDVWDAIAAVKGGLSANKAAELFRVPSRTLYDKIKKLGIPPTKHRRSENMSNVGNVQYDIGANSSTVGFENITKSTSEGTSDPIENPISTIETTFAEIREKSNVSENPFDIDLKSPLPQVSSAISQPQSPSQSEIKDNDNEAKDLTVSRRSNVHVIVSPNSTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299397;
- 90% Identity
- iTF_01299397;
- 80% Identity
- iTF_01299397;