Rmeg012759.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- -
- Assembly
- GCA_963989365.1
- Location
- OZ022416.1:40638675-40639132[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2 5.4e+03 -2.0 0.1 35 42 3 10 1 12 0.77 2 2 1.7e-12 1.5e-09 38.2 0.0 2 38 16 52 15 54 0.95
Sequence Information
- Coding Sequence
- ATGGTTCGCGTGTATCGAAGAAAAACGACGCAACAGTCATGGAGCGAGGCTGCTATGGAAAACGCTGTCCGAGTGGTTTTGAAGAAAGAAATGACACTGAATCAAGCTTCACAATGTTTTAACATCCCACGGACAACTCTGAGAAGACGTGTTCAGATATTTTCACAAACTCGGGACATGGAATTGAGTACGTTGAAAGGACTAGGCAGATTTCAAACCGTTTTTAGCGCAGCTCAAGAACAAGAGattgtaaaatatttgaaagatCTAGATGATCGTCTTCTCGGGCTTTCAAAAGCGGAAATCAGAGTTTTGGCGTATCAGTTAACCGTTAAGAAtgatcttgaaaataatttcactgGTATATAA
- Protein Sequence
- MVRVYRRKTTQQSWSEAAMENAVRVVLKKEMTLNQASQCFNIPRTTLRRRVQIFSQTRDMELSTLKGLGRFQTVFSAAQEQEIVKYLKDLDDRLLGLSKAEIRVLAYQLTVKNDLENNFTGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -