Rmeg017354.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- lola
- Assembly
- GCA_963989365.1
- Location
- OZ022418.1:30566061-30572637[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-16 4e-13 49.6 0.0 2 42 428 469 427 472 0.94
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAATTCTGTTTACGATGGAACAATCATCAGCCAAATTTCATATCCGTCTTCTCGTCGCTGCTGAACAATGAGACTCTGGTGGACGTTACTCTGGCCGCCGAGGGTCGTCACCTTCAAGCTCACAAAGTCGTACTTTCGGCGTGCAGCACATACTTTCAGTCCCTCTTCACCGTCAATCCCTGTCAGCATCCTATCGTCATTCTCAAAGATGTCAAATTCTCCGATCTCAAGATCATGGTTGATTTCATGTATTACGGCGAAGTCAATGTTTCCCAGGATCAATTGCCCTCGATAATCAagACTGCGGAAAGTTTGAAGATCAAGGGCCTCGCGGAGATGCACACAGCTTCTTTGACAAAGTGGCCGAGCGAAACTGGTGGTGTCGATCGTGGAGAGTCTTGTTCTCCGAGTCCTTCCCCCTTGTCGCCCTCTTTCCGTAGAAAACGTTTGCGCAAAGGATCGACTGGTTCAACTTCTGGAGGATCCGCCGACAAGACTGAGGAAATCAACGAGATTACATTAGTCGCTACGAATATCATTAAACCTGAACCTCACATTGTTCCCCAAGAAGGTAGCGAGCATCTCAGGCGTTCGATCAACGCTACAACCGATACGCAAGGCAGTATCGACGAGGATCAAATATCTATCATGAGCAACATGGAAAGCAGCACAACGACAACACCGGCTCAGAGCGAAGGTTCTTTACAAGAAGTTGGCCACCAAAGTGGTAATGTTGGTCACAGTTCCGTGTCTTCTCATCCTCCGGCTCACCAAGGATTGCAATGGACAATAATGGAGCACACGTATCCGCGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGGTCCAAGCGTCGTCGGCGTTTACAACACCCGAAATATTGGCGACATCGAGCATCAGCGAGCATCAATATCAATCGggtggtggcggtggtggtggcggcggcggcggcggcggcgtaAGTGGCGGGGGTACGAGTACGTCGACACCGGGGGGGCCGATTTGTGCATTGACCAATTATCCGGATTCACCGAGCCACGGTTCGatgcagcaacagcagcagcagcagcaacagcagcattCCTCGAATACGGGGGGAGGAATAGGAAGTGGCGGTGGCGGAAATGGGAACGGTAACGGCGGCCAAGGTAATGCTGGCGGTGGTGGACAATCGCCAGGACAAACGCAATGTCCGAGCAATTGTCAAAGTCCTTGCGCAAGTCCACAGGCTacgattaaaagaaaaagatcgACCAATCCTCAAGCGGATGAAAACTTTATTCGAGCTCTCGAAGCGGTTCGTTACGGTGGTATTGGTTTTTGTAAAGCCGCTCGAATGTTCGGCGTTAACAATCGTACCTTGTGGCTCGAATACAAAAAACGTGGATATCCAAACAATCGTCCCAGCTTGAAATCCCGTGTAAAACAAGAAACAGCCTCGTCGCCACCTCCACCATCAGCGACTTCTTCACAAACTGTCAATTCCCAAAGTCCAACCCCAATGGGACCACCAACGACACCTCACACGACACACAACACACATCCGACACACACCATGCTCACCGCTCATAGCCCACACGCTATGCTCTCCGGATACATCGACAGCAGACACACCGATTATACATTACCGAGCTCCACCATGCCCATTAATTTACACGGTGTCAATTACAATTCTATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSETGGVDRGESCSPSPSPLSPSFRRKRLRKGSTGSTSGGSADKTEEINEITLVATNIIKPEPHIVPQEGSEHLRRSINATTDTQGSIDEDQISIMSNMESSTTTTPAQSEGSLQEVGHQSGNVGHSSVSSHPPAHQGLQWTIMEHTYPRFALSSCQTNLSVQASSAFTTPEILATSSISEHQYQSGGGGGGGGGGGGGVSGGGTSTSTPGGPICALTNYPDSPSHGSMQQQQQQQQQQHSSNTGGGIGSGGGGNGNGNGGQGNAGGGGQSPGQTQCPSNCQSPCASPQATIKRKRSTNPQADENFIRALEAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQETASSPPPPSATSSQTVNSQSPTPMGPPTTPHTTHNTHPTHTMLTAHSPHAMLSGYIDSRHTDYTLPSSTMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629212;
- 90% Identity
- iTF_00439385;
- 80% Identity
- iTF_01299388;