Rneb006435.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- nfxl1
- Assembly
- GCA_948150685.1
- Location
- OX411308.1:154175783-154213320[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.5 3.6e+04 -3.7 1.9 14 19 164 169 164 169 0.83 2 18 0.067 1.6e+03 0.6 0.4 4 10 200 206 199 206 0.96 3 18 4e-08 0.00097 20.5 15.1 1 19 214 231 214 231 0.99 4 18 3.7e-05 0.9 11.0 20.8 1 18 267 284 257 285 0.87 5 18 0.87 2.1e+04 -3.0 0.5 6 10 310 314 309 314 0.91 6 18 2.4e-08 0.00058 21.2 14.3 1 19 320 338 320 338 0.99 7 18 0.6 1.4e+04 -2.4 3.9 5 10 366 371 363 371 0.80 8 18 1.6e-06 0.038 15.4 8.1 2 18 374 390 374 391 0.96 9 18 1.8e-05 0.42 12.0 15.8 1 18 426 443 426 444 0.94 10 18 9.2e-11 2.2e-06 28.9 12.9 1 18 453 470 453 471 0.97 11 18 0.62 1.5e+04 -2.5 1.0 5 10 499 504 499 504 0.90 12 18 7.4e-05 1.8 10.1 6.0 8 19 518 529 517 529 0.88 13 18 0.13 3.2e+03 -0.4 11.7 1 12 538 548 538 548 0.95 14 18 2 4.8e+04 -4.7 3.2 14 18 576 580 576 581 0.85 15 18 0.024 5.7e+02 2.0 6.1 1 11 617 627 611 628 0.90 16 18 6.7e-06 0.16 13.4 18.4 1 19 655 672 655 672 0.97 17 18 3e-06 0.072 14.5 13.9 1 19 715 735 715 735 0.95 18 18 1.3 3.1e+04 -3.5 0.2 9 11 752 754 750 755 0.75
Sequence Information
- Coding Sequence
- ATGGATAACAAACATTCTAGAAATGTACCTCAGCCAAAGAAATCTAAAAAAGGTAGTGCAAAGAAATCAAGCTATGAAAATAACGAAGGAAAAAGTGGAGAAGCTAAGTTTAAAGAAGCCCAAATGAAATTACAACAATTGGTTCAGAAACATTTAGAAGAAAAGAATTTATCTTCCTCTGATGAAGAAGAAGAATTAGAGACTAACAATATTTTAGGATCAGTAATCAAGAATTATTCCCAATATGGTGGAAAAAATGAAGACTTGGAGCGTACACAGAATTTTTTAGAAAATGTATTTCATTCTGGTGCAGCTGCTTGTTTGATTTGTATAGCGACAGTTAAACGACATGACCAAATATGGAGTTGCTCATCTTGTTTCGGATTTTTCCATTTACTGTGTATTCAAAGATGGGCTAAAGATAGTATTGCTCATCAAAAACTTGCTACTGAAGAAAGACCTGGTTTGAAAACAAGCAGTATCCTATGGCAGTGCCCAAAGTGTCGTAAGGATTATGAACAAACATCAATTCCAAATGCTTATATATGTTTCTGCGGCCAAAAACATAATCCAGAATTTCAACCATGGTTAGTTCCTCATTCATGTGGCGAAGTTTGCAATAAAAGTCTTTCTCCTTTATGCGGTCACTATTGTTTATTGCTATGTCATCCAGGACCATGCCCTCCTTGTCCCAAAACCATCTCAATGAGTTGCTATTGCAAGAAAGGTGGAAGGAAAACTGTACGCTGCAGTGAAAAAGAGTGGTCTTGTGGTGCTGTTTGTGGAAAGGTACTTCAATGTCAGCAACATCCCTGTTCAGAAGTCTGTCATCCGGGCCATTGCCCTCCGTGTGGAAAGACTTCGCTAGTCAGGTGCGATTGTGGTGCTGAGAAGTCACTTAGGCTTTGTACTCAACTCCAATGGCATTGTAACAAGGTATGTGGAAAACCTTTGAGCTGTGGAAAACATGTATGTGAAAAAGTTTGTCATAAAGGTGAATGTGGCGACTGCCCGCGTAGCCTTCCAAGAACATGCCCCTGTGGCCGAAACACCTTAATTATACCATGTGTTGAAGATGTTATGACTTGTGGAGAAACATGTGAAAAATTGTGTGAAGCTGGCATCCATATATGTCATCAGCGGTGCCATAGAGGAGCATGTCCAATGTGTCTAGAAGTAGTCCTAAAGACTTGTCAGTGTGGATTACGCCAAAAAGAGGTTTCTTGTCATCAAAAGGCATATCTTTGTGATGCAAAGTGCAAGAGAATGAGAGATTGCAATATACATCCGTGCAACCGTAAGTGCTGTGATGGTAATTGCCCGCCATGTGAACGTCCTTGCTGTAAAACTTTGTCATGTGGCAACCATAAGTGTTCTTCAGTCTGTCACCGTGGTCCTTGTTATCCGTGCAACATAGTGAAGCAGGTGTCTTGCAAGTGCGGAAGTACCACTGTCACAGTCCCTTGTGGAGCTGCTAGGCGAACCAATCCTCCTAGATGTAATAAACCATGCAAAAATCCACCAAAATGTGATCATTTGAAGAGAGAAGAACATAAATGTCATTTTGGAGATTGCCCGCCATGTAGGCTTATTTGTGGCAGTAAGAAGGAGTGTGGACATTGTTGTCCTGAAATATGCCATACTGCCTTGTATCTTCCAAAGGAAGATTATAAAGCTGCGACGCCATGGGATGTTGTAAATACTCCGTACGAATTCAAGAGATTACCATGTCCGAGATGTGAGGTTCCTATAGAAATACCTTGCTTTGGCGAGCATTTGATTCTGAAACTGCCTTGCTATAGGGTGGAACCTCAATCTTGTGGTGAAGAGTGTGGACGCCAGCTACAATGTACTAATCATGTTTGCACTTTTCTATGCCATGTTGTTGAAAATGCCTCATCGAAGACTTCAAGCGGATCGAATTGCGAAGAATGTAGCCAGGATTGTAGTGTTGAACGGGACTGTGGTCATCCCTGTCCTCTTCCTTGCCACCCAGGTGACTGTGATCCTTGCAAAGCAATCCTTAAAATCAGATGCCTGTGTGGTTTGACCCAGTTATTTGTCAACTGCAATGATTGGACATCAGCAGAAGACAAAGAAGCACTTCAGTCATGTGGAAATCGTTGTCCTAAGAATTATGAGTGTGGGCACAGGTGCGCCGCTCAGTGCCACAGTGGAGAATGCCCTCGTACGCCTCCTTGTCGTAAGAAGGTAAAGGTAACTTGTGCCTGTCATCGGCTCAAGAAGGAGCTGCCCTGTCATCTTTCATGCCAACTCAGTTGTGATAATATTTGTGATCAACTTAAAGCCGAAAAACTGAAAAAAGAAGAAGCTGAGCGTGAGATGAAGATGCTTGCTGAGGAAAACAAGAATAAGGAAGAACTTCTGAAGTACGAAAAGAGAATGCAAGGAGGGAAAAGAAGAGAAAGAAGGAAGGTTATAGATGCCAATGAAGAATCCTGGTTTGCTGCTAATTTAATGACGATAACAGGGATTTCCATCCTTACTATATCCGTTATTATTGGGTTGTATTATGCTATTTATTCATGA
- Protein Sequence
- MDNKHSRNVPQPKKSKKGSAKKSSYENNEGKSGEAKFKEAQMKLQQLVQKHLEEKNLSSSDEEEELETNNILGSVIKNYSQYGGKNEDLERTQNFLENVFHSGAAACLICIATVKRHDQIWSCSSCFGFFHLLCIQRWAKDSIAHQKLATEERPGLKTSSILWQCPKCRKDYEQTSIPNAYICFCGQKHNPEFQPWLVPHSCGEVCNKSLSPLCGHYCLLLCHPGPCPPCPKTISMSCYCKKGGRKTVRCSEKEWSCGAVCGKVLQCQQHPCSEVCHPGHCPPCGKTSLVRCDCGAEKSLRLCTQLQWHCNKVCGKPLSCGKHVCEKVCHKGECGDCPRSLPRTCPCGRNTLIIPCVEDVMTCGETCEKLCEAGIHICHQRCHRGACPMCLEVVLKTCQCGLRQKEVSCHQKAYLCDAKCKRMRDCNIHPCNRKCCDGNCPPCERPCCKTLSCGNHKCSSVCHRGPCYPCNIVKQVSCKCGSTTVTVPCGAARRTNPPRCNKPCKNPPKCDHLKREEHKCHFGDCPPCRLICGSKKECGHCCPEICHTALYLPKEDYKAATPWDVVNTPYEFKRLPCPRCEVPIEIPCFGEHLILKLPCYRVEPQSCGEECGRQLQCTNHVCTFLCHVVENASSKTSSGSNCEECSQDCSVERDCGHPCPLPCHPGDCDPCKAILKIRCLCGLTQLFVNCNDWTSAEDKEALQSCGNRCPKNYECGHRCAAQCHSGECPRTPPCRKKVKVTCACHRLKKELPCHLSCQLSCDNICDQLKAEKLKKEEAEREMKMLAEENKNKEELLKYEKRMQGGKRRERRKVIDANEESWFAANLMTITGISILTISVIIGLYYAIYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -