Rneb039844.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411310.1:124658956-124670815[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.031 6.5 8.8 4.3 1 23 74 97 74 97 0.98 2 17 0.73 1.5e+02 4.4 5.7 1 23 104 127 104 127 0.92 3 17 7.8 1.6e+03 1.2 0.7 3 23 135 156 135 156 0.90 4 17 0.0036 0.76 11.7 4.5 1 23 234 257 234 257 0.98 5 17 0.12 25 6.9 0.8 1 23 370 393 370 393 0.92 6 17 0.00078 0.16 13.8 1.0 2 23 411 433 410 433 0.95 7 17 0.0075 1.6 10.7 0.3 1 23 439 462 439 462 0.97 8 17 0.06 13 7.9 2.1 2 23 499 520 498 520 0.93 9 17 0.0045 0.94 11.4 2.3 1 23 526 549 526 549 0.97 10 17 0.033 6.8 8.7 7.4 1 23 554 577 554 577 0.95 11 17 0.28 59 5.8 3.6 1 23 583 606 583 606 0.93 12 17 0.025 5.2 9.1 1.3 1 23 612 635 612 635 0.95 13 17 0.00027 0.057 15.2 2.4 1 23 641 664 641 664 0.97 14 17 5.5e-05 0.012 17.4 2.7 1 23 670 693 670 693 0.97 15 17 0.00023 0.049 15.4 2.0 1 23 699 722 699 722 0.97 16 17 0.12 26 6.9 1.5 2 23 729 751 729 751 0.96 17 17 0.00038 0.08 14.8 1.1 1 23 757 780 757 780 0.97
Sequence Information
- Coding Sequence
- ATGCGGAGTAAAGAGGTTTCACCTGCATCTGTGGGAACAATGATCAAATTAAAACATGAAGATGTGAAAGGGGGAGAAGTGGCAATTAAGGAAGAACCCGAAGATGAAGAATCATTGCAAAAATCAGCTGATGATGCCGTAGTCACTATAAAAAGCGAGCCTGATGAAATTGAACCAGGTGACGATTCTCTATTTCAAGGCTTTAAAACTGTCACCCCGTATAGATGTCACCATTGTGGATTAGAGTGGGATAAGTTTAATGATCTCAGAAGACATATTAAATCTAAGCACATTCTGAAGCGATTCAAGCACAAATGTCACTACTGTTCCTTCAAAGGAAGTCTACTTATTCATTTAAAAAAACATATAGCAGAGAAGCATTCAGGTGCAACGTTATTATGGTGCCCATATTGTTACTACCAGACCGCCATTCCGAATTGCTTAAGGTACCATGTTATCAACAAGCACCTTAAGGGAAATTCTGAACATACTATTGGTACAGAGCATTTATTAAATTTCAAAAATGGATATCAAAACACCCAAAGTTTTACATGTGGTAATGCTTCTCAAGCTCCATTAAAGAATGAACCTATTGAAATTGAATCAGATGAAGATATGAGAGTGTCTGTGAAAAGTGAGCCTTTGGAATTTGAAAATAACCACGATTTACCATTTCAAGGTTTTGAAACTCCTATACCGTACAAATGCTATCACTGTGGAATAAAGCGAGATAAGTTTAGTGATCTGAGGAAACATATCAAGTCCAAACATGTTATGAAATTGTTAAAGCAGCATTGTCCATACTGTTGCTTCAAGGGCACCTGTCTGCAGCAGCTGAAAAATCATGTTCAAGAAAAGCACCCGAAGGAAAGAATTCTGTGGTGCCCATATTGCTATTATCAAACCTCTATTCCATACTGCTTGAGGTTTCACGTTATCAAGAGGCATATCAAAAGAAAATCTAAACATAAAGTTGGTGCAAAACTTTGTCGAGATTTGAAAAAAATGACTTATAATTATACCTCGAAGTTGCCTAATGGCGTTCGTGATCATTCAGAGAAAAATTTTTTTGTTCCCAAAGCCTACCCGTTACATGGTATTCAGCTTTATGAGTGTTTTTATTGTCATAAAAGCTGGCAAAACCTTGATGTGCTGAGGTCTCACATTGACCTTATCCACATAAAACATTTTGCTCAAAAAAGGAAGATTATAAAAAAAGATCGGCCCAATAAATGTCCATATTGCAACTATAGCACAGCGCAAGGAGATTATTTGAAACACCACATCAATGCTAAGCATACGAAAGCTGCAATGTATCCTTGCCCCTATTGCCCTTACATCGCTTATATGAAGAACTCCCTCACGTATCATTTAAAAGTCAAACACACAAACTCTAgcgaaaaactttgctgccctcattgtgatttcactgcctttactggtactattttaaaatatcatataattggcgagcatactaaagataaacacctttcttgccctcattgcgattataaatcTTTCAGACCCTACCTATTAAGATTTCACTTGCTAAAACATACTAAAGAAAAAAATTATCCTTGCCAACAGTGTAATTACAAGGCATCACGCCTCGAGTTATTAAAACATCATGTTAAATCTAAACACAATCCTGAAAAATTTAAATGTCAATTTTGTGATTTTAAATGTTCTCAATATTCCCAACTTAAACTTCATCTTCATCTAAACCACAGGGATGAACTTATGCATAAGTGTCCACAATGCGATTACAAAGCTGCTCGGGCTTATACCTTAAAATGTCACTTGCAACTGAAGcataatagcgaaaagaattttttatgcaatctttgtaattacaaaacatcattggctaataaattaaaactgcacatggatactaaacattgtgcggagaagctccacaagtgcccacactgtagctatgaagtagctcaagctttctcactgaaaaatcatataagaatcaaacatgaccgagagaaacctcataaatgcccaaactgtgattatagatgtgcatctgcttcttatctgctttctcatatcagagtgaagcatacgaaagaaaagattttcaagtgtgagtattgtgattatacctcagggtccaacagtagtctaaaatatcatgtaaaatctaaacacttaagggatagtttccggcagtgtccacattgtgagtacaaTGCTCTTACTACTAGTGCTTACAACCGCCACATGAAAAGGTTGCACAGTACTGAGAAACCATTCAAGTGTCCACATTGTGATGCTAAGTATCCATTTGGTTGGGAATTGAAACGACATATAAAAAACCAACATTCAGATATTGAGGACGATCGGTGA
- Protein Sequence
- MRSKEVSPASVGTMIKLKHEDVKGGEVAIKEEPEDEESLQKSADDAVVTIKSEPDEIEPGDDSLFQGFKTVTPYRCHHCGLEWDKFNDLRRHIKSKHILKRFKHKCHYCSFKGSLLIHLKKHIAEKHSGATLLWCPYCYYQTAIPNCLRYHVINKHLKGNSEHTIGTEHLLNFKNGYQNTQSFTCGNASQAPLKNEPIEIESDEDMRVSVKSEPLEFENNHDLPFQGFETPIPYKCYHCGIKRDKFSDLRKHIKSKHVMKLLKQHCPYCCFKGTCLQQLKNHVQEKHPKERILWCPYCYYQTSIPYCLRFHVIKRHIKRKSKHKVGAKLCRDLKKMTYNYTSKLPNGVRDHSEKNFFVPKAYPLHGIQLYECFYCHKSWQNLDVLRSHIDLIHIKHFAQKRKIIKKDRPNKCPYCNYSTAQGDYLKHHINAKHTKAAMYPCPYCPYIAYMKNSLTYHLKVKHTNSSEKLCCPHCDFTAFTGTILKYHIIGEHTKDKHLSCPHCDYKSFRPYLLRFHLLKHTKEKNYPCQQCNYKASRLELLKHHVKSKHNPEKFKCQFCDFKCSQYSQLKLHLHLNHRDELMHKCPQCDYKAARAYTLKCHLQLKHNSEKNFLCNLCNYKTSLANKLKLHMDTKHCAEKLHKCPHCSYEVAQAFSLKNHIRIKHDREKPHKCPNCDYRCASASYLLSHIRVKHTKEKIFKCEYCDYTSGSNSSLKYHVKSKHLRDSFRQCPHCEYNALTTSAYNRHMKRLHSTEKPFKCPHCDAKYPFGWELKRHIKNQHSDIEDDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764276;
- 90% Identity
- -
- 80% Identity
- -