Rneb048369.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411309.1:105400838-105437959[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00068 0.14 14.0 4.0 1 23 128 151 128 151 0.96 2 10 0.00039 0.081 14.8 0.1 1 23 178 201 178 201 0.96 3 10 0.12 26 6.9 2.5 1 20 281 300 281 304 0.87 4 10 5.3 1.1e+03 1.7 0.2 6 23 373 390 371 390 0.85 5 10 8.8e-07 0.00018 23.1 1.1 1 23 396 418 396 418 0.95 6 10 2.3e-05 0.0047 18.6 3.2 2 23 435 457 434 457 0.96 7 10 0.032 6.7 8.7 1.3 1 23 463 485 463 485 0.98 8 10 0.2 42 6.2 1.3 1 19 491 509 491 513 0.94 9 10 5.1e-06 0.0011 20.7 4.8 1 23 519 542 519 542 0.98 10 10 7.2 1.5e+03 1.3 1.3 1 23 549 572 549 572 0.91
Sequence Information
- Coding Sequence
- ATGGAAGTTTTGAATGATGATTTGTTTACCTTGCCATTGGTTTTGGATTCACCAGAACATCATTCCGTTAGTTTAACAAATTGTAATGGTTTGCAATTAGAAGTCAAAGACCAATCTGTACCTTTAGTTATTCTTGAGAATGGAGACTTAATGTTGCAGAGCATAACAGATTGCCCCATCTTGCTCTCCAACAATTTGGCTAATGGGAATTATATGACTGATGAAGATGTTTTCATTAAAGATTCTGATTATAAATCAAGTGAATCTACTATTAATTTCAGTAAAGAAGATACTGTTGAAGTTAGGAGTCCCGTTTCAGACCATATTGAGATAAATACTGACAATTTATTGATAGAAGATCTAGTAGAAACAGTCGTTATATACAAATGCAAATTGTGCCATTTTAAAACTACTGACAAATCTTCTCTTTCCACACATTTAAAAGCATTACATTTAAAGAATGCCGAAAAAGGAAACAGCTTTATTGCAAAAGACAATCCCAGTAAAGAAGCCTTATCTGAAAAAATGGCCTTTATGTGTGGAAAGTGCTCTGAAGCATTTGCTTCATTCTCTGACTGGAGATCTCATATGGCTATGGTTCATGAGATAGTGATGGGGGTCAAAGATACAATTGAGAATGAAGCATTAAATGGAGGCCCACCAGTTGATTTAGAGATGATGCAAAAGAAGTCCAAACCCCTGCAAATCGCTCCGAAAGCTAAATACGTCATACCATCAAAAGAAAAAAAAATTGTATGTCCAGTGGAAAGCTGTTTAATTCGATTATCCAGTCGAGATTTAATTGAAAAACATCGGGAATGCCATGTAAGCTCTCGCAACTTTGCCTGTCCGCATTGTTCTCAACCATTTCGCAAGTGGTATGAGTGTGCAAACCATCTTTGGAAATCACATTCTGAGGATGTTGATCTCTATTCCTGTCCTCTTCAGCCAATAAGATGTCCCAAAAGGAGAGTGGGGACAAAATTCATCGTTTCAAGTAGGAGCAGGGAAAATAGTAAAAGAGACCGAGAAAGGAGAAATAGGGGGAGTTCTTGTGAGAAGTTTGAAGTGGGTAGTTCTTGGGAGAAGCCAGAAGACGGAGGTTCGCAGAGGAATTGTGAATTCAAAACAGCTTTGAGAGCAAAACTTGAAGTCCATGTTAAAACACATTATAATGAGAGAGGATATTTATGCACTGAATGTGGTAAAAGCTTTAAACAAGCATTTCAGTTGCAAAATCATAGAGTTACTCATCTGAAAGTGTCTGATCCAGCTAATGTTCCTAATTGGTCTAGGAAACAAGAATGTTCCCAATGCAAACGGACCTTCTGTGATAGTAAAGCTCTTAAAAAGCATATTCAGTCAGTCCATTCAAATTTACGACCTTATGTTTGTAATGTTTGTGGCCATACATCAGCATTGAAAAATAGAATGACTCTTCATTTGCGGCAGCATACTGGAGAAAAGCCATTTTCTTGCCCATTTTGTCCATTTATTACAGGTGACCAGAATTGTCTCAGACGACATGCATGGCGACATTCGCGTGTCCGACCATATTCCTGTCCACATTGCGAATACAGCTGTATCCAGAGTAGTTCATTGAAGAAACATATAAAAACTCAACATCCTACATCTTCTGAAGTTTTTTCCTGTCGACAATGTTCATTCACATCTCTCTCAAAGAATTCTCTTGACAACCACATCGTCAAGAATCATGATGGAAAAACTGAAGCTGGTAAAGAAACTCGTGTTATTTATGTTGGTGCATTATCAGAAACTGTTGAAGGAACAGATTCTGGACAGCTGATTGCATTGCCAGTAGAAATACTAATGGATGATGATGAATCCCAGAACTTTTTTGAAAACACCGTCATAGATACAGGTGGAATCACAATTCCTGCTGAACTTAACTTACAAAAATAA
- Protein Sequence
- MEVLNDDLFTLPLVLDSPEHHSVSLTNCNGLQLEVKDQSVPLVILENGDLMLQSITDCPILLSNNLANGNYMTDEDVFIKDSDYKSSESTINFSKEDTVEVRSPVSDHIEINTDNLLIEDLVETVVIYKCKLCHFKTTDKSSLSTHLKALHLKNAEKGNSFIAKDNPSKEALSEKMAFMCGKCSEAFASFSDWRSHMAMVHEIVMGVKDTIENEALNGGPPVDLEMMQKKSKPLQIAPKAKYVIPSKEKKIVCPVESCLIRLSSRDLIEKHRECHVSSRNFACPHCSQPFRKWYECANHLWKSHSEDVDLYSCPLQPIRCPKRRVGTKFIVSSRSRENSKRDRERRNRGSSCEKFEVGSSWEKPEDGGSQRNCEFKTALRAKLEVHVKTHYNERGYLCTECGKSFKQAFQLQNHRVTHLKVSDPANVPNWSRKQECSQCKRTFCDSKALKKHIQSVHSNLRPYVCNVCGHTSALKNRMTLHLRQHTGEKPFSCPFCPFITGDQNCLRRHAWRHSRVRPYSCPHCEYSCIQSSSLKKHIKTQHPTSSEVFSCRQCSFTSLSKNSLDNHIVKNHDGKTEAGKETRVIYVGALSETVEGTDSGQLIALPVEILMDDDESQNFFENTVIDTGGITIPAELNLQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764170;
- 90% Identity
- -
- 80% Identity
- -