Rneb042990.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411312.1:57879593-57888944[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3 6.3e+02 2.5 0.2 5 13 55 63 53 64 0.87 2 11 0.038 7.9 8.5 0.1 2 23 189 210 188 210 0.95 3 11 0.4 84 5.3 0.5 2 11 226 235 225 243 0.90 4 11 0.091 19 7.3 2.2 2 21 250 269 249 270 0.93 5 11 0.00029 0.06 15.2 0.4 1 23 272 295 272 295 0.94 6 11 0.0022 0.46 12.4 3.0 1 19 341 359 341 361 0.97 7 11 2.8e-05 0.0058 18.4 0.5 2 23 372 393 371 393 0.96 8 11 0.0001 0.021 16.6 0.1 1 23 399 421 399 421 0.97 9 11 8e-07 0.00017 23.2 3.2 1 23 427 449 427 449 0.97 10 11 3.9e-06 0.00082 21.1 2.0 1 23 455 477 455 477 0.98 11 11 2.5e-05 0.0053 18.5 4.2 1 23 492 514 492 514 0.96
Sequence Information
- Coding Sequence
- ATGGCATCAAAATCAATGAAGTGTGTTTACCCTAACTGTGAAACACTGTTAACAGACAAGAAAACTAGCTTTTACGCATTTCCATTAAATGACGAAGTTTGTTTAAACAAATGGAAAACAGCGCTTGGGCGTCCTGACTTGAAGCCCACAAAGAGTGATCTTATTTGTGGCAAACATTTTTCTTCAAGATGTTTTGAAAATAATATTTTAAAACCAGATTCAGTGCCAATTGAGGTGCCATGGCTGAAAGAAAATCGCATCGATGAAGTTGCTGAATTTGATATTTGCCGTCTATGCGGAAAAGCTAAACAAATGCTTATGACAGATATATTTGACGATGACTTAGACATATGTGAAAAAATGAGTCTTTGTTTGCCCATTGTTGTTAATCCAAATGATTCTTTACCTCAAACCATTTGTGATGACTGCTTTGATCATCTCGACATTGCTGCAAATCTCATAAAAAAGTGTATAGAAACTGAGGCTAAGCTGACGAAGCTGTTTTCTAACCCTCAGCAACTCCGGAATACTAATCATAAACCAATTCCTTTAAATGGGCCAATAGTATGCGATAGATGTGATGTATACTTTACTGATATGGCTCTTTTCGATCAACATATGTCCGAACATGAGGCTGATGAACAGAAAGCAGGCACAGACGAAGTTCCATTGAAAGTCTGTTCGGATTGTGGGCATGTATTTAGCGAAGATTTTTTTTATGATGAGCATAAAGTCAATTGTGATACTATGTGTAATACTTGTGAAAAGGTTTTAGAAAACAATTGCAAATTGAATAGCCACATTTGTGCAAAATATAGTTGCGAATTATGCCCTTCAGAATTCAGATCAGAAAGTTTATTAAAGAAACACGTTCTTCAGAGTCATATCAATAGAACACAAGCCAACATAAATCAGGAAGAGAAAATAGAAATGGAGGAATGCGAGTCAAGTGGAGAAATAGTGGACATAAAACCTACGACTGTTACTCGTAATGGAAAAGTTCGTCCGCGCAAAGAGCTCTATCATTGTAATATTTGTGATATTAAGTTTACATCAAATAAGAAATTGAGAGATCACTGTGTTGAACTGCATGGTACTGCGAATGTATTATGGATTTGTAAATTTTGTGGGAAATCTATGACAACCAAAGTTAGCTTACAGATTCACCAAAGAATTCATTTTGACAGCAAACCATATATTTGTGAATGGTGTGGAAATGGATACAGATCTCGAGCGAATCTTAATCAGCATCAAGTAATTCATACTGGAATCAGAAAACATTCATGCCCAAAGTGTGGAAAGAAATTTTCGCGGAAAGCTTTTGTAAGAACGCATATGAGAGTGCATACAGGGGAAAGGCCATACGTATGCGATATTTGTGGCCACAGATTTACGCAACTCGGTGATATGAAGAGGCATCGGAACAGGCATCAGACACCGCACATACCTGCTTATCCATCTGATGCAAGGTCCCACGCATGTGACATTTGCGGACACCGTTTCCCTCATCTTTCCGCATTGAAAAAGCACCGCTTGACACATTTTACTCAACCTGTAACAATTATCGAAGAAGGGGATCCTATAATCCATGAAGGGAACATGGAAGTAGAAGTGGTAGAAGAAAAAATCATTATCGAATAA
- Protein Sequence
- MASKSMKCVYPNCETLLTDKKTSFYAFPLNDEVCLNKWKTALGRPDLKPTKSDLICGKHFSSRCFENNILKPDSVPIEVPWLKENRIDEVAEFDICRLCGKAKQMLMTDIFDDDLDICEKMSLCLPIVVNPNDSLPQTICDDCFDHLDIAANLIKKCIETEAKLTKLFSNPQQLRNTNHKPIPLNGPIVCDRCDVYFTDMALFDQHMSEHEADEQKAGTDEVPLKVCSDCGHVFSEDFFYDEHKVNCDTMCNTCEKVLENNCKLNSHICAKYSCELCPSEFRSESLLKKHVLQSHINRTQANINQEEKIEMEECESSGEIVDIKPTTVTRNGKVRPRKELYHCNICDIKFTSNKKLRDHCVELHGTANVLWICKFCGKSMTTKVSLQIHQRIHFDSKPYICEWCGNGYRSRANLNQHQVIHTGIRKHSCPKCGKKFSRKAFVRTHMRVHTGERPYVCDICGHRFTQLGDMKRHRNRHQTPHIPAYPSDARSHACDICGHRFPHLSALKKHRLTHFTQPVTIIEEGDPIIHEGNMEVEVVEEKIIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764104;
- 90% Identity
- iTF_00764104;
- 80% Identity
- -