Rneb002085.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411308.1:53862869-53866390[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.7 3.6e+02 3.3 6.6 1 23 59 82 59 82 0.96 2 11 0.0011 0.23 13.3 0.4 2 23 97 118 96 118 0.97 3 11 0.00026 0.054 15.3 5.3 1 23 125 147 125 147 0.98 4 11 4.2e-08 8.8e-06 27.2 1.2 1 23 153 175 153 175 0.98 5 11 0.00014 0.03 16.1 1.0 1 23 181 203 181 203 0.98 6 11 0.00015 0.031 16.1 0.2 1 23 209 231 209 231 0.97 7 11 0.0023 0.49 12.3 0.5 6 23 241 258 237 258 0.96 8 11 1.6e-05 0.0034 19.1 1.7 1 23 264 286 264 286 0.97 9 11 0.0056 1.2 11.1 1.6 1 23 292 315 292 315 0.96 10 11 7.4e-05 0.016 17.0 0.8 2 23 332 354 331 354 0.96 11 11 0.0015 0.32 12.9 2.3 1 23 378 401 378 401 0.97
Sequence Information
- Coding Sequence
- ATGACCCCTCAAATAATGTATGAAGTACAAGATGAGTGGGAAACTGCTTGGCCTGTTGAAGTGAAACTTGTTACAGATGATTCTTTTTGCAGTTTAACTGAAACAGAAGCTGAAGGGATTGCTTTGCCTAAAGCCTCAAAATGTAAAAAGGAAAAGAATGAAGCTACCAAGGAATATGAATGTTTCGATTGCGAATTTCATACTCCTCATTTAAGCCAACTTAAATGCCATATAAAAAATACGCATTTATTTTCTAAGTTTTCTCGACGTGCTGTAAAATTGTTTTTGAAATGCAACGAATGTGGTTACAGGACTGGATTTATGAACGATTTAACTAAGCATATTGCTAAACATGCAGATAGTAGTAGTACTTTTTCATGTAAGCTTTGTCCGTATAAAACAACTCACCAAAGTCGCTTGAAACAACATTTAAGAAGGCATGCTAATGTACAAGTCCATACTTGTGAAGTTTGTGGCCGTTCCGTGTCTTCTTCTAGTGATTTAAAAAAACACATGAGAATTCACACAGGAGAAAAACCTTATTCATGTTCTTTATGTGATTATTCAGCCAACTCTAGTACATCCCTCAGAATGCATATGAGTAAGCATACTGGGGATAGACCTTTTGCTTGTGAGCTCTGTGAGTATAAGACAGCTCGTCGTGGGGATCTTACTTCTCATATGTTATCTCATTCTAAGGATAAACCTTATATGTGTCCTTGTGGGTTTCGAACTGCCCGTCCAGCTCACTTAAAGCGACATATGGCAGTTCATAATGGTAATCGTCCATTTGCTTGTACATTTTGTAATAGTTATTTCACTAGATCAGATGATCTCAAGAAACACATAAAAATTCATATTGGGGAGAGAAATCATCCATGTCCATACTGTAATTATACAGCCCTTGCTCAATCCACTCTTAGGAGACATTTAAGGAGAAAACATGCTGGAAATAAATCAGTCAAGGCAGATATTGATGATGTTTTGAAAACACCTTGTCCATATTGTGATTATAAAGCTAAAACGTCTCGCTCTCTCAACTCACACATAAAAAGAAGGCATATAAATCCCTCTGCTGAAACGAGTATAATTGGAAGAACTCATTTCCTGTGTTCTCTACGTAAGCTTTGTTTTGTTTGCTTTCATTGTGACTATCGAACCGGATATTTGAGTACGTTAAGAAGTCATATTACTACTGAGCATAATGGAGGTAATTGGAAATCACGTTAA
- Protein Sequence
- MTPQIMYEVQDEWETAWPVEVKLVTDDSFCSLTETEAEGIALPKASKCKKEKNEATKEYECFDCEFHTPHLSQLKCHIKNTHLFSKFSRRAVKLFLKCNECGYRTGFMNDLTKHIAKHADSSSTFSCKLCPYKTTHQSRLKQHLRRHANVQVHTCEVCGRSVSSSSDLKKHMRIHTGEKPYSCSLCDYSANSSTSLRMHMSKHTGDRPFACELCEYKTARRGDLTSHMLSHSKDKPYMCPCGFRTARPAHLKRHMAVHNGNRPFACTFCNSYFTRSDDLKKHIKIHIGERNHPCPYCNYTALAQSTLRRHLRRKHAGNKSVKADIDDVLKTPCPYCDYKAKTSRSLNSHIKRRHINPSAETSIIGRTHFLCSLRKLCFVCFHCDYRTGYLSTLRSHITTEHNGGNWKSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764065;
- 90% Identity
- iTF_00165423;
- 80% Identity
- -