Rneb048866.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411309.1:120442693-120445812[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0039 0.82 11.6 0.6 1 21 480 500 480 502 0.90 2 18 0.015 3.2 9.7 1.0 1 23 508 530 508 530 0.98 3 18 0.044 9.2 8.3 3.3 3 21 540 558 538 559 0.93 4 18 0.49 1e+02 5.0 1.7 2 21 563 582 562 583 0.95 5 18 0.68 1.4e+02 4.5 0.4 2 23 588 610 587 610 0.93 6 18 2.2e-05 0.0047 18.7 4.4 1 23 617 639 617 639 0.97 7 18 5.8e-05 0.012 17.3 6.3 1 23 648 671 648 671 0.96 8 18 0.015 3.1 9.8 0.1 2 23 682 704 681 704 0.93 9 18 0.13 27 6.8 2.0 1 23 725 747 725 747 0.96 10 18 0.02 4.3 9.3 1.9 1 23 753 775 753 775 0.97 11 18 0.26 55 5.9 2.0 1 23 794 816 794 816 0.94 12 18 1.8 3.7e+02 3.2 1.5 1 23 822 845 822 845 0.85 13 18 6.2e-06 0.0013 20.4 0.8 1 23 861 883 861 883 0.98 14 18 1.2e-06 0.00026 22.6 0.5 1 23 889 911 889 911 0.98 15 18 0.0026 0.55 12.1 0.4 1 23 917 939 917 939 0.98 16 18 0.00029 0.061 15.2 3.3 1 23 945 967 945 967 0.98 17 18 7.4e-06 0.0015 20.2 0.9 1 23 973 995 973 995 0.99 18 18 0.00086 0.18 13.7 3.5 3 23 1003 1024 1002 1024 0.93
Sequence Information
- Coding Sequence
- ATGCCGAAACATTGGGCTTCTATTGTAGTGAGTTTAGAAACAGAGAAAATAATGAAATTGATAGTAAAAAACAATGCTGGAGAAACTGTTTCTGTTGAATTAAATTCTATTGATACTTTCAAAGATATGAAAGAAAAAGTGGAAAAAAAGTTGGGATTGTCACTTGATCTTAAAGATATTGCCATAAAAGGAAAGAAGATAACCGAATCACAACTTGTCACAGACTATTTTGGTTGTTACCTTCCTAAAATGGAACCACCCCAATCAAAAATATTTTGTGTTGTACCTGGTTGCAAAAATATTAAAGAAAGAAATCCTGACAAAGTGTTCTTCGAATTCCCTTCTGAAGAAATAAGATGTCATCAATGGGTTCTATATTGTCAACGTTTAGCTGTAGGTTCACGTAAAAAACGACTTCACATAACTCCTGAATCCACTATTTGTAGTGATCATTTTCGACCAGACCAGTTCGTAAAAAACACAAATACTCTTTTGAAAAGAACAGCTGTTCCCTGTATGAAATTTTTCGTTGATGAATCTAAAGAACCAAATCAGTATTCTGAAGGCTATGGTTTTGCCAATGCTAATTACGTTTCACTGCTTACTGAACCAAGTTCCAATTGTTTAAAAAATCATCAAGTCAGATTATGTAGGCTTTGTGCTTCAACAAGTGATGAATTTTATCTGATATTTGATGATTTTGGAAAAGAAATGAAAATAGCTGAAAAAATTAATTTGTGTTTGCCTCTCAGTGTTCAGATTACAGATGAATTGCCTAAACAGATATGCAAAACATGTTTCAAAGAACTTAATGATTTATTTGAAATGGCAGATCAATGTAGCATATCTCAGCATAACATTATAACTTTAAATCAGAATAGTACTTATAACTGCCCTCCATTTCCAATTTTGTTAGAAACCCATGAAGTATATGAAGATGAGAAAAACTATTTTGAAATAGTTTGCCCCTTGTGTGATGATGGGAGGCTAAGCAGTTGTTCCCCAGACAATTTCAATAAGAATAGTAAAAATGGAAATGGCAATGATTTTCCTTATGAAACAAAAGGTAACTTCATTTGTAATGATCTCTATTTGCTAGATGAATATAATCAACTCATCAATACTGGAAATATTCAAGCCAAATTTGAGGGGAATGATACAGCTTACGCTTTATATAGTGAACCGCAGACAAGAATGGAAGTTAGCACGTTATGTGAACCAATCCTTACCCACAGAGATCCTCTTAAAATAGAAGAGAAGTCTCCCGGACATGAAGCTGAAGATATAATCAACTCTTTCTCTCAACTGGGAAGCCCCCTAAGCATAGAAGAATTCAATAACAGTAGCCTTAAAAAATCATTTTTTTCTGAATCAGACCCTTTAAACATAGAAACTAGTAATAAAATGGATTATGAACAATTAGAGAAAGGATTGATATTTATTTGTCGAATTTGTGCTAAAGAGTTTTCTAAAAGCTCTGAACTGCTTAGTCATTCTTATGATCATTCATGCAGAAACTTTTATCAATGTTGTGCCTGTGTAATTTTTTTTTCAGGCAAAGATGATTTAGAACAGCATTTACAACAACACTTGTTGCTACAAGACACTGTTACATTCTGTAACTATTGCCATGAACGTTTTAATTCTTCTTTGCTTTTAGAAAGTCATTTATGTTTTAAAGAAAATAAATGTACTGTTTGTTATACCAATCTGCGAACCGATTCCCAATTGTGTGAGCACTTAAAATATTCTGGTATTTCAAGGTGCAATATCTGTTACAAGATTTTAGGAGATGACCTAAAACTGCAGAAACACCTGCTGTACACTCATTCCTCATCTAGCAGGACTCATTGCTGCGAAGAATGCGGAAAAGTATTCAAATCAGAAGCATCCATGAAATATCATCAGAGAACTCATCAAAATAATGATGGAGCCAAGCCATATTGTTGCAGTAGATGTGGTAAATGTTTCATGCGAAAATCAATGTTGATCAACCATATGTCTTCCACACATACTAATATAATTGCTGAAACCTCTTGTATTACTTGTAAATTTTGCAATGAAACATTTCCTAATACAGATGCTGCAGTAGCCCACATGGATAATATTCATAAGATGGAATCAATGGAGAATACTACTTACAGTTTTGAAATGCAAACTGTAAAAAGGGTATTTATTTGTGAATTTTGTGAACGTTGTTTTGTAGAAGATTCTATACTGAATAAGCATCGTGAAAAGCATCCATCAGAGAAACCTTATGAGTGTAAATTATGCCGCAATACCTTTGTCTCTGAAGAAGAACTTGACAACCACAAGCATTCTCACAGAACTGATAACGAAGCTGGTGAATATTCAGTAGATTTCACTTTACCAAAGACATATTTGTGTGAGTATTGTGAAAGATGTTTTCTCAATCAAATCAAATATTCAGAACATTTGAGTATCCATTTTGGACCAGAACCTTATAAGTGCAAGCATTGCCCTCTAATTAAATTTCAGACTCTGTATGATGCAGTAGAACATCGAGAAAGACACGAAGAAATGTTACCTGAAAGAGAAGAGTTTGATTCCTTTCGTCCTTATGATTGCCATTATTGCAGTAAAACCTTTGCTATTGAAGATGCAttaataaagcacataagaatgcatacaggagaaaagcctttcatatgtgatcagtgtggtaaaggtttttcacaaagctccggtttatacactcatcaaaaagtccattcaacagaaagaccatattcttgttcagtttgcccaagaacatttaaaattaaaggagatcgggatgttcatgtcagaaaacattcaggagatcgtccatataaatgtgaatattgtgggaaagctttcatgactcagcatgtttatagtcagcataagaaaattcacacaggagaaaggccttataaatgtgatgtttgtgggatagcatttcgaagatctcatgttttaacagttcacaaaaggattcacactggagagaagccgaatatttgtcacatatgtggaaaaAGTTATCGGCAGAAAGGAGACATGTTGAAACATTGTAGGGTTCAACACGGAATTTTTAATACTAAAAAAATCCTAAGCCCTTTACTACCTTGCTAA
- Protein Sequence
- MPKHWASIVVSLETEKIMKLIVKNNAGETVSVELNSIDTFKDMKEKVEKKLGLSLDLKDIAIKGKKITESQLVTDYFGCYLPKMEPPQSKIFCVVPGCKNIKERNPDKVFFEFPSEEIRCHQWVLYCQRLAVGSRKKRLHITPESTICSDHFRPDQFVKNTNTLLKRTAVPCMKFFVDESKEPNQYSEGYGFANANYVSLLTEPSSNCLKNHQVRLCRLCASTSDEFYLIFDDFGKEMKIAEKINLCLPLSVQITDELPKQICKTCFKELNDLFEMADQCSISQHNIITLNQNSTYNCPPFPILLETHEVYEDEKNYFEIVCPLCDDGRLSSCSPDNFNKNSKNGNGNDFPYETKGNFICNDLYLLDEYNQLINTGNIQAKFEGNDTAYALYSEPQTRMEVSTLCEPILTHRDPLKIEEKSPGHEAEDIINSFSQLGSPLSIEEFNNSSLKKSFFSESDPLNIETSNKMDYEQLEKGLIFICRICAKEFSKSSELLSHSYDHSCRNFYQCCACVIFFSGKDDLEQHLQQHLLLQDTVTFCNYCHERFNSSLLLESHLCFKENKCTVCYTNLRTDSQLCEHLKYSGISRCNICYKILGDDLKLQKHLLYTHSSSSRTHCCEECGKVFKSEASMKYHQRTHQNNDGAKPYCCSRCGKCFMRKSMLINHMSSTHTNIIAETSCITCKFCNETFPNTDAAVAHMDNIHKMESMENTTYSFEMQTVKRVFICEFCERCFVEDSILNKHREKHPSEKPYECKLCRNTFVSEEELDNHKHSHRTDNEAGEYSVDFTLPKTYLCEYCERCFLNQIKYSEHLSIHFGPEPYKCKHCPLIKFQTLYDAVEHRERHEEMLPEREEFDSFRPYDCHYCSKTFAIEDALIKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSTERPYSCSVCPRTFKIKGDRDVHVRKHSGDRPYKCEYCGKAFMTQHVYSQHKKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNICHICGKSYRQKGDMLKHCRVQHGIFNTKKILSPLLPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01298448;
- 90% Identity
- iTF_01298448;
- 80% Identity
- iTF_01298448;